{ "type": "genome", "identifier": "GCF_000226495.2", "organism": "Aggregatibacter aphrophilus ATCC 33389", "title": "Aggregatibacter aphrophilus ATCC 33389", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Bumgarner laboratory, Department of Microbiology, University of Washington", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000226495.2", "bioproject": "PRJNA224116", "biosample": "SAMN02471993", "wgs_master": "AEWB00000000.2", "refseq_category": "na", "taxid": "985008", "species_taxid": "732", "organism_name": "Aggregatibacter aphrophilus ATCC 33389", "infraspecific_name": "strain=ATCC 33389", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2015/07/31", "asm_name": "ASM22649v3", "asm_submitter": "Bumgarner laboratory, Department of Microbiology, University of Washington", "gbrs_paired_asm": "GCA_000226495.3", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/226/495/GCF_000226495.2_ASM22649v3", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2267213", "genome_size_ungapped": "2267213", "gc_percent": "42.000000", "replicon_count": "0", "scaffold_count": "48", "contig_count": "48", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000226495.2-RS_2024_05_17", "annotation_date": "2024-05-17", "total_gene_count": "2186", "protein_coding_gene_count": "2050", "non_coding_gene_count": "59", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2015-07-31", "dateModified": "2015-07-31", "datePublished": "2015-07-31", "_annotation": { "sample_count": 1, "sample_organism": [ "Aggregatibacter aphrophilus ATCC 33389" ], "sample_taxid": [ "985008" ], "sample_host_organism": [ "Homo sapiens" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA" ], "sample_host_location_id": [], "data_size": "0.644 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2267213", "Number of Sequences": "48", "Longest Sequences (bp)": "455421", "N50 (bp)": "144936", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "42.2", "Number of CDSs": "2127", "Average Protein Length": "313.4", "Coding Ratio (%)": "88.2", "Number of rRNAs": "3", "Number of tRNAs": "50", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Aggregatibacter aphrophilus", "strain": "strain=ATCC 33389", "accession": "GCA_000226495.3", "taxid": 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"thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Aggregatibacter", "aphrophilus", "ATCC", "33389" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }