{ "type": "genome", "identifier": "GCF_000226875.1", "organism": "Neisseria shayeganii 871", "title": "Neisseria shayeganii 871", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Baylor College of Medicine", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000226875.1", "bioproject": "PRJNA224116", "biosample": "SAMN02299457", "wgs_master": "AGAY00000000.1", "refseq_category": "na", "taxid": "1032488", "species_taxid": "607712", "organism_name": "Neisseria shayeganii 871", "infraspecific_name": "strain=871", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2011/10/03", "asm_name": "ASM22687v1", "asm_submitter": "Baylor College of Medicine", "gbrs_paired_asm": "GCA_000226875.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/226/875/GCF_000226875.1_ASM22687v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2354550", "genome_size_ungapped": "2292837", "gc_percent": "58.000000", "replicon_count": "0", "scaffold_count": "26", "contig_count": "112", "annotation_provider": "NCBI RefSeq", "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)", "annotation_date": "2024-02-15", "total_gene_count": "2448", "protein_coding_gene_count": "2243", "non_coding_gene_count": "51", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2011-10-03", "dateModified": "2011-10-03", "datePublished": "2011-10-03", "_annotation": { "sample_count": 1, "sample_organism": [ "Neisseria shayeganii 871" ], "sample_taxid": [ "1032488" ], "sample_host_organism": [ "Homo sapiens" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "not determined" ], "sample_host_location_id": [], "data_size": "0.637 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 97.16, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2354550", "Number of Sequences": "26", "Longest Sequences (bp)": "2322135", "N50 (bp)": "2322135", "Gap Ratio (%)": "2.621010", "GCcontent (%)": "57.9", "Number of CDSs": "2205", "Average Protein Length": "290.9", "Coding Ratio (%)": "81.7", "Number of rRNAs": "3", "Number of tRNAs": "46", "Number of CRISPRs": "3" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Neisseria shayeganii", "strain": "strain=871", "accession": "GCA_000226875.1", "taxid": 607712, "species_taxid": 607712, "relation_to_type": "type", "validated": true, "ani": 99.9932, "matched_fragments": 768, 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}, { "organism_name": "Neisseria zoodegmatis", "strain": "strain=NCTC12230", "accession": "GCA_900187305.1", "taxid": 326523, "species_taxid": 326523, "relation_to_type": "type", "validated": true, "ani": 80.6694, "matched_fragments": 298, "total_fragments": 775, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Eikenella longinqua", "strain": "strain=NML02-A-017", "accession": "GCA_001648355.1", "taxid": 1795827, "species_taxid": 1795827, "relation_to_type": "type", "validated": true, "ani": 80.1907, "matched_fragments": 411, "total_fragments": 775, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Neisseria dentiae", "strain": "strain=DSM 19151", "accession": "GCA_002108595.1", "taxid": 194197, "species_taxid": 194197, "relation_to_type": "type", "validated": true, "ani": 80.1472, "matched_fragments": 363, "total_fragments": 775, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Eikenella halliae", "strain": "strain=NML130454", "accession": "GCA_001648475.1", "taxid": 1795832, "species_taxid": 1795832, "relation_to_type": "type", "validated": true, "ani": 80.0312, "matched_fragments": 405, "total_fragments": 775, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Neisseria dentiae", "strain": "strain=NCTC13012", "accession": "GCA_900453685.1", "taxid": 194197, "species_taxid": 194197, "relation_to_type": "type", "validated": true, "ani": 80.0035, "matched_fragments": 376, "total_fragments": 775, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Neisseria dentiae", "strain": "strain=DSM 19151", "accession": "GCA_014055005.1", "taxid": 194197, "species_taxid": 194197, "relation_to_type": "type", "validated": true, "ani": 79.9842, "matched_fragments": 377, "total_fragments": 775, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Eikenella corrodens", "strain": "strain=FDAARGOS_1474", "accession": "GCA_019930845.1", "taxid": 539, 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