<?xml version="1.0" ?>
<BioSampleSet><BioSample access="public" submission_date="2013-08-02T12:07:41.523" publication_date="2013-08-02T00:00:00.000" last_update="2024-04-14T02:02:37.059" id="2299448" accession="SAMN02299448">   <Ids>     <Id db="BioSample" is_primary="1">SAMN02299448</Id>     <Id db_label="Sample name">64733</Id>   </Ids>   <Description>     <Title>MIGS Cultured Bacterial/Archaeal sample from Peptoniphilus indolicus ATCC 29427</Title>     <Organism taxonomy_id="997350" taxonomy_name="Peptoniphilus indolicus ATCC 29427"/>     <Comment>       <Paragraph>Keywords: GSC:MIxS;MIGS:6.0</Paragraph>     </Comment>   </Description>   <Owner>     <Name>University of Maryland School of Medicine, Institute for Genome Sciences</Name>     <Contacts>       <Contact>         <Name>           <First>Lynn</First>           <Last>Schriml</Last>         </Name>       </Contact>     </Contacts>   </Owner>   <Models>     <Model version="3.0">MIGS.ba</Model>   </Models>   <Package display_name="MIGS: cultured bacteria/archaea; version 6.0">MIGS.ba.6.0</Package>   <Attributes>     <Attribute attribute_name="env_package" harmonized_name="env_package" display_name="environmental package">missing</Attribute>     <Attribute attribute_name="investigation_type" harmonized_name="investigation_type" display_name="investigation type">bacteria_archaea</Attribute>     <Attribute attribute_name="strain" harmonized_name="strain" display_name="strain">ATCC 29427</Attribute>     <Attribute attribute_name="lat_lon" harmonized_name="lat_lon" display_name="latitude and longitude">not determined</Attribute>     <Attribute attribute_name="biome" harmonized_name="env_broad_scale" display_name="broad-scale environmental context">terrestrial biome [ENVO:00000446]</Attribute>     <Attribute attribute_name="collection date" harmonized_name="collection_date" display_name="collection date">not determined</Attribute>     <Attribute attribute_name="feature" harmonized_name="env_local_scale" display_name="local-scale environmental context">human-associated habitat [ENVO:00009003]</Attribute>     <Attribute attribute_name="project_type">Reference Genome</Attribute>     <Attribute attribute_name="geo_loc_name" harmonized_name="geo_loc_name" display_name="geographic location">not determined</Attribute>     <Attribute attribute_name="material" harmonized_name="env_medium" display_name="environmental medium">biological product [ENVO:02000043]</Attribute>     <Attribute attribute_name="misc_param: HMP supersite">oral</Attribute>     <Attribute attribute_name="misc_param: HMP body site">not determined</Attribute>     <Attribute attribute_name="project_name" harmonized_name="project_name" display_name="project name">Peptoniphilus indolicus ATCC 29427</Attribute>     <Attribute attribute_name="host" harmonized_name="host" display_name="host">Homo sapiens</Attribute>     <Attribute attribute_name="host taxid" harmonized_name="host_taxid" display_name="host taxonomy ID">9606</Attribute>     <Attribute attribute_name="finishing strategy (depth of coverage)">Level 2: High-Quality Draft23.11x;391</Attribute>     <Attribute attribute_name="estimated_size" harmonized_name="estimated_size" display_name="estimated size">2102000</Attribute>     <Attribute attribute_name="source_mat_id" harmonized_name="source_material_id" display_name="source material identifiers">ATCC 29427, CCUG 17639, DSM 20464</Attribute>     <Attribute attribute_name="sequencing method">not determined</Attribute>     <Attribute attribute_name="assembly">Newbler v2.3-04192010</Attribute>     <Attribute attribute_name="nucleic acid extraction">not determined</Attribute>     <Attribute attribute_name="sop">http://hmpdacc.org/doc/CommonGeneAnnotation_SOP.pdf</Attribute>     <Attribute attribute_name="isol_growth_condt" harmonized_name="isol_growth_condt" display_name="isolation and growth condition">not determined</Attribute>     <Attribute attribute_name="num_replicons" harmonized_name="num_replicons" display_name="number of replicons">not determined</Attribute>     <Attribute attribute_name="ref_biomaterial" harmonized_name="ref_biomaterial" display_name="reference for biomaterial">not determined</Attribute>     <Attribute attribute_name="type-material">type strain of Peptococcus indolicus</Attribute>   </Attributes>   <Links>     <Link type="entrez" target="bioproject">64733</Link>   </Links>   <Status status="live" when="2013-08-02T12:11:45.410"/> </BioSample> </BioSampleSet>
