{ "type": "genome", "identifier": "GCF_000227315.1", "organism": "Peptoniphilus indolicus ATCC 29427", "title": "Peptoniphilus indolicus ATCC 29427", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Baylor College of Medicine", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000227315.1", "bioproject": "PRJNA224116", "biosample": "SAMN02299448", "wgs_master": "AGBB00000000.1", "refseq_category": "na", "taxid": "997350", "species_taxid": "33030", "organism_name": "Peptoniphilus indolicus ATCC 29427", "infraspecific_name": "strain=ATCC 29427", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2011/10/04", "asm_name": "ASM22731v1", "asm_submitter": "Baylor College of Medicine", "gbrs_paired_asm": "GCA_000227315.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/227/315/GCF_000227315.1_ASM22731v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2237864", "genome_size_ungapped": "2101630", "gc_percent": "31.500000", "replicon_count": "0", "scaffold_count": "98", "contig_count": "302", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000227315.1-RS_2024_08_21", "annotation_date": "2024-08-21", "total_gene_count": "2230", "protein_coding_gene_count": "2095", "non_coding_gene_count": "34", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2011-10-04", "dateModified": "2011-10-04", "datePublished": "2011-10-04", "_annotation": { "sample_count": 1, "sample_organism": [ "Peptoniphilus indolicus ATCC 29427" ], "sample_taxid": [ "997350" ], "sample_host_organism": [ "Homo sapiens" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "not determined" ], "sample_host_location_id": [], "data_size": "0.586 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2237864", "Number of Sequences": "98", "Longest Sequences (bp)": "1336521", "N50 (bp)": "1336521", "Gap Ratio (%)": "6.087680", "GCcontent (%)": "31.7", "Number of CDSs": "2109", "Average Protein Length": "285.1", "Coding Ratio (%)": "80.6", "Number of rRNAs": "1", "Number of tRNAs": "26", "Number of CRISPRs": "3" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Peptoniphilus indolicus", "strain": "strain=ATCC 29427", "accession": "GCA_000227315.1", "taxid": 33030, "species_taxid": 33030, "relation_to_type": "type", "validated": true, "ani": 99.9831, "matched_fragments": 678, "total_fragments": 703, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Peptoniphilus indolicus", "strain": "strain=NCTC11088", "accession": "GCA_900454665.1", "taxid": 33030, "species_taxid": 33030, "relation_to_type": "type", "validated": true, "ani": 99.649, "matched_fragments": 677, "total_fragments": 703, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Peptoniphilus asaccharolyticus", "strain": "strain=FDAARGOS_1135", "accession": "GCA_016791605.1", "taxid": 1258, "species_taxid": 1258, "relation_to_type": "type", "validated": true, "ani": 84.1369, "matched_fragments": 460, "total_fragments": 703, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Peptoniphilus asaccharolyticus", "strain": "strain=DSM 20463", "accession": "GCA_900176115.1", "taxid": 1258, "species_taxid": 1258, "relation_to_type": "type", "validated": true, "ani": 84.0949, "matched_fragments": 462, "total_fragments": 703, 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"below_threshold" }, { "organism_name": "Anaerosphaera aminiphila", "strain": "strain=DSM 21120", "accession": "GCA_900129925.1", "taxid": 1120994, "species_taxid": 1120994, "relation_to_type": "type", "validated": true, "ani": 76.4564, "matched_fragments": 102, "total_fragments": 703, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Peptoniphilus stercorisuis", "strain": "strain=DSM 27563", "accession": "GCA_017874395.1", "taxid": 1436965, "species_taxid": 1436965, "relation_to_type": "type", "validated": true, "ani": 76.42, "matched_fragments": 131, "total_fragments": 703, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000227315.1", "gtdb_species": "s__Peptoniphilus indolicus", "ani": 99.9831, "matched_fragments": 678, "total_fragments": 703, "gtdb_taxonomy": 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"vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Peptoniphilus", "indolicus", "ATCC", "29427" ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }