{
    "type": "genome",
    "identifier": "GCF_000227725.2",
    "organism": "Thiorhodospira sibirica ATCC 700588",
    "title": "Thiorhodospira sibirica ATCC 700588",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "DOE Joint Genome Institute",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_000227725.2",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN02441807",
        "wgs_master": "AGFD00000000.2",
        "refseq_category": "reference genome",
        "taxid": "765914",
        "species_taxid": "154347",
        "organism_name": "Thiorhodospira sibirica ATCC 700588",
        "infraspecific_name": "strain=ATCC 700588",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2021/08/18",
        "asm_name": "ASM22772v3",
        "asm_submitter": "DOE Joint Genome Institute",
        "gbrs_paired_asm": "GCA_000227725.3",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/227/725/GCF_000227725.2_ASM22772v3",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "3196878",
        "genome_size_ungapped": "3188578",
        "gc_percent": "57.000000",
        "replicon_count": "0",
        "scaffold_count": "5",
        "contig_count": "88",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)",
        "annotation_date": "2024-03-08",
        "total_gene_count": "2924",
        "protein_coding_gene_count": "2730",
        "non_coding_gene_count": "52",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2021-08-18",
    "dateModified": "2021-08-18",
    "datePublished": "2021-08-18",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Thiorhodospira sibirica ATCC 700588"
        ],
        "sample_taxid": [
            "765914"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Russia"
        ],
        "sample_host_location_id": [],
        "data_size": "0.895 MB",
        "sample_ph_range": {
            "min": 995.0,
            "max": 995.0
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "3196878",
        "Number of Sequences": "5",
        "Longest Sequences (bp)": "2936659",
        "N50 (bp)": "2936659",
        "Gap Ratio (%)": "0.259660",
        "GCcontent (%)": "56.8",
        "Number of CDSs": "2842",
        "Average Protein Length": "323.5",
        "Coding Ratio (%)": "86.3",
        "Number of rRNAs": "3",
        "Number of tRNAs": "45",
        "Number of CRISPRs": "6"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Thiorhodospira sibirica",
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                "accession": "GCA_000227725.3",
                "taxid": 154347,
                "species_taxid": 154347,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1063,
                "total_fragments": 1063,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Ectothiorhodospira magna",
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                "accession": "GCA_900110965.1",
                "taxid": 867345,
                "species_taxid": 867345,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.2137,
                "matched_fragments": 126,
                "total_fragments": 1063,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Thioalkalivibrio denitrificans",
                "strain": "strain=ALJD",
                "accession": "GCA_002000365.1",
                "taxid": 108003,
                "species_taxid": 108003,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.1412,
                "matched_fragments": 77,
                "total_fragments": 1063,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Thioalkalivibrio paradoxus",
                "strain": "strain=ARh 1",
                "accession": "GCA_000227685.3",
                "taxid": 108010,
                "species_taxid": 108010,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.1371,
                "matched_fragments": 53,
                "total_fragments": 1063,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Thioalkalivibrio thiocyanodenitrificans",
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                "accession": "GCA_000378965.1",
                "taxid": 243063,
                "species_taxid": 243063,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.0366,
                "matched_fragments": 68,
                "total_fragments": 1063,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Thioalkalivibrio sulfidiphilus",
                "strain": "strain=HL-EbGR7",
                "accession": "GCA_000021985.1",
                "taxid": 1033854,
                "species_taxid": 1033854,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.8705,
                "matched_fragments": 91,
                "total_fragments": 1063,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Thiohalobacter thiocyanaticus",
                "strain": "strain=Hrh1",
                "accession": "GCA_003932505.1",
                "taxid": 585455,
                "species_taxid": 585455,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.3638,
                "matched_fragments": 59,
                "total_fragments": 1063,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Marichromatium gracile",
                "strain": "strain=DSM 203",
                "accession": "GCA_016583515.1",
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                "species_taxid": 1048,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.3492,
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                "total_fragments": 1063,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Marichromatium gracile",
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                "accession": "GCA_004343155.1",
                "taxid": 1048,
                "species_taxid": 1048,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.2925,
                "matched_fragments": 53,
                "total_fragments": 1063,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
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            "contamination": 0.0,
            "strain_heterogeneity": 0.0
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        "gtdb_result": [
            {
                "accession": "GCF_000227725.1",
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                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "num_clustered_genomes": 1,
                "status": "conclusive"
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                "accession": "GCF_900110965.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Ectothiorhodospirales;f__Ectothiorhodospiraceae;g__Ectothiorhodospira",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
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            },
            {
                "accession": "GCF_016584105.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Ectothiorhodospirales;f__Ectothiorhodospiraceae;g__Ectothiorhodospira",
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "num_clustered_genomes": 1,
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            },
            {
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                "mean_intra_species_ani": "N/A",
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            {
                "accession": "GCF_001632845.1",
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                "matched_fragments": 112,
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Ectothiorhodospirales;f__Ectothiorhodospiraceae;g__Ectothiorhodospira",
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            },
            {
                "accession": "GCF_000225005.1",
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                "mean_intra_species_ani": "N/A",
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            {
                "accession": "GCF_000378305.1",
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            {
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    },
    "_bac2feature": {
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        "cell_diameter": 0.477,
        "cell_length": 0.845,
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        "growth_tmp": 26.0,
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        "bacillus_cell_shape": 1.0,
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    "_genome_taxon": [
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        "sibirica",
        "ATCC",
        "700588"
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    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}