{ "type": "genome", "identifier": "GCF_000227765.1", "organism": "Neisseria wadsworthii 9715", "title": "Neisseria wadsworthii 9715", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Baylor College of Medicine", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000227765.1", "bioproject": "PRJNA224116", "biosample": "SAMN02299456", "wgs_master": "AGAZ00000000.1", "refseq_category": "na", "taxid": "1030841", "species_taxid": "607711", "organism_name": "Neisseria wadsworthii 9715", "infraspecific_name": "strain=9715", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2011/10/06", "asm_name": "ASM22776v1", "asm_submitter": "Baylor College of Medicine", "gbrs_paired_asm": "GCA_000227765.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/227/765/GCF_000227765.1_ASM22776v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2467075", "genome_size_ungapped": "2405905", "gc_percent": "48.500000", "replicon_count": "0", "scaffold_count": "16", "contig_count": "97", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000227765.1-RS_2024_08_21", "annotation_date": "2024-08-21", "total_gene_count": "2332", "protein_coding_gene_count": "2242", "non_coding_gene_count": "51", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2011-10-06", "dateModified": "2011-10-06", "datePublished": "2011-10-06", "_annotation": { "sample_count": 1, "sample_organism": [ "Neisseria wadsworthii 9715" ], "sample_taxid": [ "1030841" ], "sample_host_organism": [ "Homo sapiens" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "not determined" ], "sample_host_location_id": [], "data_size": "0.678 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2467075", "Number of Sequences": "16", "Longest Sequences (bp)": "2446422", "N50 (bp)": "2446422", "Gap Ratio (%)": "2.479454", "GCcontent (%)": "48.6", "Number of CDSs": "2256", "Average Protein Length": "300.6", "Coding Ratio (%)": "82.5", "Number of rRNAs": "3", "Number of tRNAs": "43", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Neisseria wadsworthii", "strain": "strain=9715", "accession": "GCA_000227765.1", "taxid": 607711, "species_taxid": 607711, "relation_to_type": "type", "validated": true, "ani": 99.996, "matched_fragments": 810, "total_fragments": 817, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Neisseria canis", "strain": "strain=ATCC 14687", "accession": "GCA_002108495.1", "taxid": 493, "species_taxid": 493, "relation_to_type": "type", "validated": true, "ani": 90.1625, "matched_fragments": 652, "total_fragments": 817, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Neisseria canis", "strain": "strain=NCTC10296", "accession": "GCA_900636765.1", "taxid": 493, "species_taxid": 493, "relation_to_type": "type", "validated": true, "ani": 89.985, "matched_fragments": 682, "total_fragments": 817, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Neisseria dumasiana", "strain": "strain=LMG 30012", "accession": "GCA_022870885.1", "taxid": 1931275, "species_taxid": 1931275, "relation_to_type": "type", "validated": true, "ani": 82.2885, "matched_fragments": 364, "total_fragments": 817, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Neisseria 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"GCA_022870865.1", "taxid": 1282863, "species_taxid": 1282863, "relation_to_type": "type", "validated": true, "ani": 78.6467, "matched_fragments": 332, "total_fragments": 817, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Neisseria flavescens", "strain": "strain=ATCC 13120", "accession": "GCA_005221285.1", "taxid": 484, "species_taxid": 484, "relation_to_type": "type", "validated": true, "ani": 78.5313, "matched_fragments": 213, "total_fragments": 817, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Morococcus cerebrosus", "strain": "strain=CIP 81.93", "accession": "GCA_022749515.1", "taxid": 1056807, "species_taxid": 1056807, "relation_to_type": "type", "validated": true, "ani": 78.5254, "matched_fragments": 242, "total_fragments": 817, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Neisseria meningitidis", "strain": "strain=PartJ-Nmeningitidis-RM8376", "accession": "GCA_022869645.1", "taxid": 487, 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