{
    "type": "genome",
    "identifier": "GCF_000230715.2",
    "organism": "Natronobacterium gregoryi SP2",
    "title": "Natronobacterium gregoryi SP2",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "DOE Joint Genome Institute",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_000230715.2",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN02232042",
        "wgs_master": "na",
        "refseq_category": "reference genome",
        "taxid": "797304",
        "species_taxid": "44930",
        "organism_name": "Natronobacterium gregoryi SP2",
        "infraspecific_name": "strain=SP2",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Complete Genome",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2012/12/10",
        "asm_name": "ASM23071v3",
        "asm_submitter": "DOE Joint Genome Institute",
        "gbrs_paired_asm": "GCA_000230715.3",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/230/715/GCF_000230715.2_ASM23071v3",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "archaea",
        "genome_size": "3788356",
        "genome_size_ungapped": "3788356",
        "gc_percent": "62.000000",
        "replicon_count": "1",
        "scaffold_count": "1",
        "contig_count": "1",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_000230715.2-RS_2024_10_21",
        "annotation_date": "2024-10-21",
        "total_gene_count": "3765",
        "protein_coding_gene_count": "3591",
        "non_coding_gene_count": "60",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2012-12-10",
    "dateModified": "2012-12-10",
    "datePublished": "2012-12-10",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Natronobacterium gregoryi SP2"
        ],
        "sample_taxid": [
            "797304"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Kenya"
        ],
        "sample_host_location_id": [],
        "data_size": "1.044 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 4.17,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "3788356",
        "Number of Sequences": "1",
        "Longest Sequences (bp)": "3788356",
        "N50 (bp)": "3788356",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "62.2",
        "Number of CDSs": "3661",
        "Average Protein Length": "286.1",
        "Coding Ratio (%)": "82.9",
        "Number of rRNAs": "9",
        "Number of tRNAs": "46",
        "Number of CRISPRs": "2"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Natronobacterium gregoryi",
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                "accession": "GCA_000230715.3",
                "taxid": 44930,
                "species_taxid": 44930,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 1262,
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                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Natronobacterium gregoryi",
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                "accession": "GCA_002855455.1",
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                "species_taxid": 44930,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9219,
                "matched_fragments": 1157,
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                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Natronobacterium gregoryi",
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                "accession": "GCA_900114025.1",
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            },
            {
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                "accession": "GCA_000337655.1",
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                "relation_to_type": "type",
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                "ani": 99.8855,
                "matched_fragments": 1163,
                "total_fragments": 1262,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Natronobacterium texcoconense",
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                "accession": "GCA_900104065.1",
                "taxid": 1095778,
                "species_taxid": 1095778,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 933,
                "total_fragments": 1262,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Halobiforma haloterrestris",
                "strain": "strain=DSM 13078",
                "accession": "GCA_900112205.1",
                "taxid": 148448,
                "species_taxid": 148448,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.8207,
                "matched_fragments": 810,
                "total_fragments": 1262,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
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            "contamination": 4.17,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_000230715.2",
                "gtdb_species": "s__Natronobacterium gregoryi",
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                "matched_fragments": 1262,
                "total_fragments": 1262,
                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Natrialbaceae;g__Natronobacterium",
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                "mean_intra_species_ani": "99.99",
                "min_intra_species_ani": "99.97",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 4,
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            },
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                "matched_fragments": 935,
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                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000337895.1",
                "gtdb_species": "s__Halobiforma nitratireducens",
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                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Natrialbaceae;g__Halobiforma",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000226975.2",
                "gtdb_species": "s__Halobiforma lacisalsi",
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                "matched_fragments": 804,
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                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Natrialbaceae;g__Halobiforma",
                "ani_circumscription_radius": 95.4693,
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            },
            {
                "accession": "GCF_900112205.1",
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                "mean_intra_species_ani": "N/A",
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                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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            {
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            {
                "accession": "GCF_003610195.1",
                "gtdb_species": "s__Halopiger aswanensis",
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                "mean_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
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            },
            {
                "accession": "GCF_000455345.1",
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                "mean_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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        ]
    },
    "_bac2feature": {
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        "cell_diameter": -0.046,
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        "growth_tmp": 42.0,
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        "coding_genes": 3615.333,
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        "sporulation": 0.0,
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        "mesophilic_range_tmp": null,
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        "bacillus_cell_shape": 0.0,
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    "_genome_taxon": [
        "Natronobacterium",
        "gregoryi",
        "SP2"
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    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}