{
    "type": "genome",
    "identifier": "GCF_000230735.2",
    "organism": "Natrinema pellirubrum DSM 15624",
    "title": "Natrinema pellirubrum DSM 15624",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "JGI",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_000230735.2",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN02261373",
        "wgs_master": "na",
        "refseq_category": "reference genome",
        "taxid": "797303",
        "species_taxid": "69525",
        "organism_name": "Natrinema pellirubrum DSM 15624",
        "infraspecific_name": "strain=DSM 15624",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Complete Genome",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2012/12/27",
        "asm_name": "ASM23073v3",
        "asm_submitter": "JGI",
        "gbrs_paired_asm": "GCA_000230735.3",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/230/735/GCF_000230735.2_ASM23073v3",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "archaea",
        "genome_size": "4354100",
        "genome_size_ungapped": "4354100",
        "gc_percent": "64.000000",
        "replicon_count": "3",
        "scaffold_count": "3",
        "contig_count": "3",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_000230735.2-RS_2024_10_21",
        "annotation_date": "2024-10-21",
        "total_gene_count": "4372",
        "protein_coding_gene_count": "4160",
        "non_coding_gene_count": "61",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2012-12-27",
    "dateModified": "2012-12-27",
    "datePublished": "2012-12-27",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Natrinema pellirubrum DSM 15624"
        ],
        "sample_taxid": [
            "797303"
        ],
        "sample_host_organism": [
            "fish"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Italy"
        ],
        "sample_host_location_id": [],
        "data_size": "1.195 MB",
        "sample_ph_range": {
            "min": 7278.0,
            "max": 7278.0
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 4.17,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "4354100",
        "Number of Sequences": "3",
        "Longest Sequences (bp)": "3790479",
        "N50 (bp)": "3790479",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "64.0",
        "Number of CDSs": "4286",
        "Average Protein Length": "285.7",
        "Coding Ratio (%)": "84.4",
        "Number of rRNAs": "10",
        "Number of tRNAs": "48",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Natrinema pellirubrum",
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                "accession": "GCA_000230735.3",
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                "species_taxid": 69525,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 1448,
                "total_fragments": 1449,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Natrinema pellirubrum",
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                "accession": "GCA_000337635.1",
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                "species_taxid": 69525,
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                "validated": true,
                "ani": 99.907,
                "matched_fragments": 1358,
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                "status": "conclusive"
            },
            {
                "organism_name": "Natrinema versiforme",
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                "accession": "GCA_000337195.1",
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                "species_taxid": 88724,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Natrinema altunense",
                "strain": "strain=JCM 12890",
                "accession": "GCA_000337155.1",
                "taxid": 222984,
                "species_taxid": 222984,
                "relation_to_type": "type",
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                "total_fragments": 1449,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Natrinema amylolyticum",
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                "accession": "GCA_020515625.1",
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                "relation_to_type": "type",
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                "ani": 84.7067,
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                "total_fragments": 1449,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Natrinema gari",
                "strain": "strain=JCM 14663",
                "accession": "GCA_000337175.1",
                "taxid": 419186,
                "species_taxid": 419186,
                "relation_to_type": "type",
                "validated": true,
                "ani": 84.3962,
                "matched_fragments": 897,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Halopiger salifodinae",
                "strain": "strain=CGMCC 1.12284",
                "accession": "GCA_900110455.1",
                "taxid": 1202768,
                "species_taxid": 1202768,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.2875,
                "matched_fragments": 839,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Haloterrigena limicola",
                "strain": "strain=JCM 13563",
                "accession": "GCA_000337475.1",
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                "species_taxid": 370323,
                "relation_to_type": "type",
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                "ani": 83.1073,
                "matched_fragments": 766,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Haloterrigena salina",
                "strain": "strain=JCM 13891",
                "accession": "GCA_000337495.1",
                "taxid": 504937,
                "species_taxid": 504937,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.738,
                "matched_fragments": 842,
                "total_fragments": 1449,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Haloterrigena salifodinae",
                "strain": "strain=ZY19",
                "accession": "GCA_003977755.1",
                "taxid": 2675099,
                "species_taxid": 2675099,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.4613,
                "matched_fragments": 826,
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                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 4.17,
            "strain_heterogeneity": 0.0
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        "gtdb_result": [
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                "accession": "GCF_000230735.2",
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                "total_fragments": 1449,
                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Natrialbaceae;g__Natrinema",
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                "mean_intra_species_ani": "99.98",
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                "num_clustered_genomes": 2,
                "status": "conclusive"
            },
            {
                "accession": "GCF_000337115.1",
                "gtdb_species": "s__Natrinema thermotolerans",
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                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Natrialbaceae;g__Natrinema",
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                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.90",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_000690595.2",
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                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
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            {
                "accession": "GCF_001953745.1",
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                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Natrialbaceae;g__Natrinema",
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                "mean_intra_species_ani": "N/A",
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            },
            {
                "accession": "GCF_002572525.1",
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                "mean_intra_species_ani": "N/A",
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            },
            {
                "accession": "GCF_900111485.1",
                "gtdb_species": "s__Natrinema hispanicum_A",
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            },
            {
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                "matched_fragments": 844,
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                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Natrialbaceae;g__Haloterrigena",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
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                "num_clustered_genomes": 1,
                "status": "-"
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        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.155,
        "cell_length": 0.176,
        "doubling_h": 0.271,
        "growth_tmp": 44.0,
        "optimum_tmp": 32.5,
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        "genome_size": 4354100.0,
        "gc_content": 63.96,
        "coding_genes": 4112.0,
        "rRNA16S_genes": 3.0,
        "tRNA_genes": 48.0,
        "gram_stain": 0.0,
        "sporulation": 0.0,
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        "range_salinity": null,
        "facultative_respiration": 0.0,
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        "mesophilic_range_tmp": null,
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        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Natrinema",
        "pellirubrum",
        "DSM",
        "15624"
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    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}