{ "type": "genome", "identifier": "GCF_000230995.2", "organism": "Mesorhizobium australicum WSM2073", "title": "Mesorhizobium australicum WSM2073", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000230995.2", "bioproject": "PRJNA224116", "biosample": "SAMN02232035", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "754035", "species_taxid": "536018", "organism_name": "Mesorhizobium australicum WSM2073", "infraspecific_name": "strain=WSM2073", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2012/12/28", "asm_name": "ASM23099v3", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_000230995.3", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/230/995/GCF_000230995.2_ASM23099v3", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "6200534", "genome_size_ungapped": "6200534", "gc_percent": "63.000000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000230995.2-RS_2024_04_29", "annotation_date": "2024-04-29", "total_gene_count": "5990", "protein_coding_gene_count": "5795", "non_coding_gene_count": "63", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2012-12-28", "dateModified": "2012-12-28", "datePublished": "2012-12-28", "_annotation": { "sample_count": 1, "sample_organism": [ "Mesorhizobium australicum WSM2073" ], "sample_taxid": [ "754035" ], "sample_host_organism": [ "Biserrula pelecinus L" ], "sample_host_organism_id": [], "sample_host_disease": [ "None" ], "sample_host_disease_id": [], "sample_host_location": [ "Australia" ], "sample_host_location_id": [], "data_size": "1.717 MB", "sample_ph_range": { "min": 58.0, "max": 58.0 }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "6200534", "Number of Sequences": "1", "Longest Sequences (bp)": "6200534", "N50 (bp)": "6200534", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "62.8", "Number of CDSs": "5992", "Average Protein Length": "300.7", "Coding Ratio (%)": "87.2", "Number of rRNAs": "6", "Number of tRNAs": "56", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Mesorhizobium australicum", "strain": "strain=WSM2073", "accession": "GCA_000230995.3", "taxid": 536018, "species_taxid": 536018, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2065, "total_fragments": 2066, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Mesorhizobium opportunistum", "strain": "strain=WSM2075", "accession": "GCA_000176035.2", "taxid": 593909, "species_taxid": 593909, "relation_to_type": "type", "validated": true, "ani": 89.2469, "matched_fragments": 1726, "total_fragments": 2066, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesorhizobium jarvisii", "strain": "strain=LMG 28313", "accession": "GCA_003601985.1", "taxid": 1777867, "species_taxid": 1777867, "relation_to_type": "type", "validated": true, "ani": 88.2781, "matched_fragments": 1540, "total_fragments": 2066, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesorhizobium japonicum", "strain": "strain=MAFF 303099", "accession": "GCA_000009625.1", "taxid": 2066070, "species_taxid": 2066070, "relation_to_type": "type", "validated": true, "ani": 88.0883, "matched_fragments": 1584, "total_fragments": 2066, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesorhizobium jarvisii", "strain": "strain=ATCC 33669", "accession": "GCA_013170785.1", "taxid": 1777867, "species_taxid": 1777867, "relation_to_type": "type", "validated": true, "ani": 88.0817, "matched_fragments": 1600, "total_fragments": 2066, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesorhizobium carmichaelinearum", "strain": "strain=ICMP 18942", "accession": "GCA_900199455.1", "taxid": 1208188, "species_taxid": 1208188, "relation_to_type": "type", "validated": true, "ani": 87.9804, "matched_fragments": 1620, "total_fragments": 2066, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesorhizobium erdmanii", "strain": "strain=USDA 3471", "accession": "GCA_000472705.1", "taxid": 1777866, "species_taxid": 1777866, "relation_to_type": "type", "validated": true, "ani": 87.7019, "matched_fragments": 1589, "total_fragments": 2066, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesorhizobium intechi", "strain": "strain=BD68", "accession": "GCA_002879535.2", "taxid": 537601, "species_taxid": 537601, "relation_to_type": "type", "validated": true, "ani": 87.5721, "matched_fragments": 1425, "total_fragments": 2066, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesorhizobium comanense", "strain": "strain=3P27G6", "accession": "GCA_005503535.1", "taxid": 2502215, "species_taxid": 2502215, "relation_to_type": "type", "validated": true, "ani": 87.1426, "matched_fragments": 1507, "total_fragments": 2066, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesorhizobium norvegicum", "strain": "strain=10.2.2", "accession": "GCA_004919685.1", "taxid": 1085774, "species_taxid": 1085774, "relation_to_type": "type", "validated": true, "ani": 87.0219, "matched_fragments": 1537, "total_fragments": 2066, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": 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