{ "type": "genome", "identifier": "GCF_000231035.2", "organism": "Saccharomonospora iraqiensis subsp. paurometabolica YIM 90007", "title": "Saccharomonospora iraqiensis subsp. paurometabolica YIM 90007", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000231035.2", "bioproject": "PRJNA224116", "biosample": "SAMN02256527", "wgs_master": "AGIT00000000.2", "refseq_category": "reference genome", "taxid": "882084", "species_taxid": "52698", "organism_name": "Saccharomonospora iraqiensis subsp. paurometabolica YIM 90007", "infraspecific_name": "strain=YIM 90007", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2014/01/16", "asm_name": "ASM23103v3", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_000231035.3", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/231/035/GCF_000231035.2_ASM23103v3", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4669397", "genome_size_ungapped": "4574497", "gc_percent": "72.000000", "replicon_count": "0", "scaffold_count": "82", "contig_count": "1031", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000231035.2-RS_2024_12_09", "annotation_date": "2024-12-09", "total_gene_count": "4850", "protein_coding_gene_count": "4378", "non_coding_gene_count": "55", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2014-01-16", "dateModified": "2014-01-16", "datePublished": "2014-01-16", "_annotation": { "sample_count": 1, "sample_organism": [ "Saccharomonospora iraqiensis subsp. paurometabolica YIM 90007" ], "sample_taxid": [ "882084" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China" ], "sample_host_location_id": [], "data_size": "1.229 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 87.5, "contamination": 4.17, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4669397", "Number of Sequences": "82", "Longest Sequences (bp)": "343562", "N50 (bp)": "171692", "Gap Ratio (%)": "2.032382", "GCcontent (%)": "72.0", "Number of CDSs": "4089", "Average Protein Length": "306.9", "Coding Ratio (%)": "80.6", "Number of rRNAs": "5", "Number of tRNAs": "53", "Number of CRISPRs": "4" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Saccharomonospora iraqiensis subsp. paurometabolica", "strain": "strain=YIM 90007", "accession": "GCA_000231035.3", "taxid": 208085, "species_taxid": 52698, "relation_to_type": "type", "validated": true, "ani": 99.9999, "matched_fragments": 1511, "total_fragments": 1517, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Saccharomonospora iraqiensis", "strain": "strain=IQ-H1", "accession": "GCA_000430445.1", "taxid": 52698, "species_taxid": 52698, "relation_to_type": "type", "validated": true, "ani": 95.9076, "matched_fragments": 1076, "total_fragments": 1517, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Saccharomonospora halophila", "strain": "strain=8", "accession": "GCA_000383775.1", "taxid": 129922, "species_taxid": 129922, "relation_to_type": "type", "validated": true, "ani": 93.3862, "matched_fragments": 1004, "total_fragments": 1517, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Saccharomonospora saliphila", "strain": "strain=YIM 90502", "accession": "GCA_000383795.1", "taxid": 369829, "species_taxid": 369829, 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80.295, "matched_fragments": 823, "total_fragments": 1517, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prauserella cavernicola", "strain": "strain=ASG 168", "accession": "GCA_016595675.1", "taxid": 2800127, "species_taxid": 2800127, "relation_to_type": "type", "validated": true, "ani": 79.7312, "matched_fragments": 803, "total_fragments": 1517, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amycolatopsis arida", "strain": "strain=DSM 45648", "accession": "GCA_004365925.1", "taxid": 587909, "species_taxid": 587909, "relation_to_type": "type", "validated": true, "ani": 79.6821, "matched_fragments": 811, "total_fragments": 1517, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amycolatopsis arida", "strain": "strain=CGMCC 4.5579", "accession": "GCA_900115565.1", "taxid": 587909, "species_taxid": 587909, "relation_to_type": "type", "validated": true, "ani": 79.6512, "matched_fragments": 810, "total_fragments": 1517, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amycolatopsis aidingensis", "strain": "strain=YIM 96748", "accession": "GCA_018885265.1", "taxid": 2842453, "species_taxid": 2842453, "relation_to_type": "type", "validated": true, "ani": 79.3036, "matched_fragments": 763, "total_fragments": 1517, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amycolatopsis thermalba", "strain": "strain=NRRL B-24845", "accession": "GCA_003385215.1", "taxid": 944492, "species_taxid": 944492, "relation_to_type": "type", "validated": true, "ani": 79.211, "matched_fragments": 766, "total_fragments": 1517, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amycolatopsis alkalitolerans", "strain": "strain=SYSUP0005", "accession": "GCA_006152065.1", "taxid": 2547244, "species_taxid": 2547244, "relation_to_type": "type", "validated": true, "ani": 78.6776, "matched_fragments": 640, "total_fragments": 1517, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Haloechinothrix aidingensis", "strain": "strain=YIM 98757", "accession": "GCA_013450155.1", "taxid": 2752311, "species_taxid": 2752311, "relation_to_type": "type", "validated": true, "ani": 78.3109, "matched_fragments": 487, "total_fragments": 1517, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amycolatopsis camponoti", "strain": "strain=A23", "accession": "GCA_902497555.1", "taxid": 2606593, "species_taxid": 2606593, "relation_to_type": "type", "validated": true, "ani": 78.1129, "matched_fragments": 788, "total_fragments": 1517, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinokineospora globicatena", "strain": "strain=DSM 44256", "accession": "GCA_024171945.1", "taxid": 103729, "species_taxid": 103729, "relation_to_type": "type", "validated": true, "ani": 77.8254, "matched_fragments": 609, "total_fragments": 1517, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { 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