{
    "type": "genome",
    "identifier": "GCF_000231055.2",
    "organism": "Saccharomonospora azurea NA-128",
    "title": "Saccharomonospora azurea NA-128",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "JGI",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_000231055.2",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN02261398",
        "wgs_master": "AGIU00000000.2",
        "refseq_category": "reference genome",
        "taxid": "882081",
        "species_taxid": "40988",
        "organism_name": "Saccharomonospora azurea NA-128",
        "infraspecific_name": "strain=NA-128",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Chromosome",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2012/03/06",
        "asm_name": "ASM23105v3",
        "asm_submitter": "JGI",
        "gbrs_paired_asm": "GCA_000231055.3",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/231/055/GCF_000231055.2_ASM23105v3",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "4763852",
        "genome_size_ungapped": "4754352",
        "gc_percent": "70.000000",
        "replicon_count": "1",
        "scaffold_count": "1",
        "contig_count": "96",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_000231055.2-RS_2024_12_13",
        "annotation_date": "2024-12-13",
        "total_gene_count": "4534",
        "protein_coding_gene_count": "4378",
        "non_coding_gene_count": "55",
        "pubmed_id": "22768365"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2012-03-06",
    "dateModified": "2012-03-06",
    "datePublished": "2012-03-06",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Saccharomonospora azurea NA-128"
        ],
        "sample_taxid": [
            "882081"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "China"
        ],
        "sample_host_location_id": [],
        "data_size": "1.277 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "4763852",
        "Number of Sequences": "1",
        "Longest Sequences (bp)": "4763852",
        "N50 (bp)": "4763852",
        "Gap Ratio (%)": "0.199418",
        "GCcontent (%)": "70.1",
        "Number of CDSs": "4468",
        "Average Protein Length": "321.5",
        "Coding Ratio (%)": "90.5",
        "Number of rRNAs": "6",
        "Number of tRNAs": "57",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "accession": "GCA_000231055.3",
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                "relation_to_type": "type",
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            },
            {
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                "status": "below_threshold"
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            {
                "organism_name": "Saccharomonospora piscinae",
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                "species_taxid": 687388,
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                "status": "below_threshold"
            },
            {
                "organism_name": "Saccharomonospora viridis",
                "strain": "strain=DSM 43017",
                "accession": "GCA_000023865.1",
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                "species_taxid": 1852,
                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Prauserella cavernicola",
                "strain": "strain=ASG 168",
                "accession": "GCA_016595675.1",
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                "species_taxid": 2800127,
                "relation_to_type": "type",
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                "matched_fragments": 845,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Amycolatopsis thermalba",
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                "accession": "GCA_003385215.1",
                "taxid": 944492,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Amycolatopsis aidingensis",
                "strain": "strain=YIM 96748",
                "accession": "GCA_018885265.1",
                "taxid": 2842453,
                "species_taxid": 2842453,
                "relation_to_type": "type",
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                "ani": 78.783,
                "matched_fragments": 680,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Amycolatopsis camponoti",
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                "species_taxid": 2606593,
                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Actinokineospora globicatena",
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                "accession": "GCA_024171945.1",
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            }
        ],
        "cc_result": {
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            "strain_heterogeneity": 0.0
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        "gtdb_result": [
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                "accession": "GCF_000231055.2",
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                "total_fragments": 1587,
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                "mean_intra_species_ani": "N/A",
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        ]
    },
    "_bac2feature": {
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        "growth_tmp": 32.333,
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        "bacillus_cell_shape": 0.0,
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        "coccobacillus_cell_shape": 1.0,
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    "_genome_taxon": [
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        "azurea",
        "NA-128"
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    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}