{
    "type": "genome",
    "identifier": "GCF_000233695.2",
    "organism": "Desulfobacter postgatei 2ac9",
    "title": "Desulfobacter postgatei 2ac9",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "JGI",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_000233695.2",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN02261381",
        "wgs_master": "AGJR00000000.2",
        "refseq_category": "reference genome",
        "taxid": "879212",
        "species_taxid": "2293",
        "organism_name": "Desulfobacter postgatei 2ac9",
        "infraspecific_name": "strain=2ac9",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Chromosome",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2012/05/31",
        "asm_name": "ASM23369v3",
        "asm_submitter": "JGI",
        "gbrs_paired_asm": "GCA_000233695.3",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/233/695/GCF_000233695.2_ASM23369v3",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "3974658",
        "genome_size_ungapped": "3972458",
        "gc_percent": "47.000000",
        "replicon_count": "1",
        "scaffold_count": "1",
        "contig_count": "23",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_000233695.2-RS_2024_08_27",
        "annotation_date": "2024-08-27",
        "total_gene_count": "3732",
        "protein_coding_gene_count": "3619",
        "non_coding_gene_count": "64",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2012-05-31",
    "dateModified": "2012-05-31",
    "datePublished": "2012-05-31",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Desulfobacter postgatei 2ac9"
        ],
        "sample_taxid": [
            "879212"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [
            "None"
        ],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Germany"
        ],
        "sample_host_location_id": [],
        "data_size": "1.122 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "3974658",
        "Number of Sequences": "1",
        "Longest Sequences (bp)": "3974658",
        "N50 (bp)": "3974658",
        "Gap Ratio (%)": "0.055351",
        "GCcontent (%)": "47.2",
        "Number of CDSs": "3617",
        "Average Protein Length": "318.2",
        "Coding Ratio (%)": "86.9",
        "Number of rRNAs": "13",
        "Number of tRNAs": "48",
        "Number of CRISPRs": "3"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Desulfobacter postgatei",
                "strain": "strain=2ac9",
                "accession": "GCA_000233695.3",
                "taxid": 2293,
                "species_taxid": 2293,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1324,
                "total_fragments": 1324,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Desulfobacter hydrogenophilus",
                "strain": "strain=AcRS1",
                "accession": "GCA_004319545.1",
                "taxid": 2291,
                "species_taxid": 2291,
                "relation_to_type": "type",
                "validated": true,
                "ani": 86.5278,
                "matched_fragments": 910,
                "total_fragments": 1324,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Desulfobacter hydrogenophilus",
                "strain": "strain=DSM 3380",
                "accession": "GCA_003261095.1",
                "taxid": 2291,
                "species_taxid": 2291,
                "relation_to_type": "type",
                "validated": true,
                "ani": 86.5012,
                "matched_fragments": 871,
                "total_fragments": 1324,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Desulfobacter hydrogenophilus",
                "strain": "strain=DSM 3380",
                "accession": "GCA_010499545.1",
                "taxid": 2291,
                "species_taxid": 2291,
                "relation_to_type": "type",
                "validated": true,
                "ani": 86.4491,
                "matched_fragments": 869,
                "total_fragments": 1324,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Desulfobacter vibrioformis",
                "strain": "strain=DSM 8776",
                "accession": "GCA_000745975.1",
                "taxid": 34031,
                "species_taxid": 34031,
                "relation_to_type": "type",
                "validated": true,
                "ani": 86.3774,
                "matched_fragments": 788,
                "total_fragments": 1324,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Desulfobacter curvatus",
                "strain": "strain=DSM 3379",
                "accession": "GCA_000373985.1",
                "taxid": 2290,
                "species_taxid": 2290,
                "relation_to_type": "type",
                "validated": true,
                "ani": 85.9635,
                "matched_fragments": 862,
                "total_fragments": 1324,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Desulfobacter latus",
                "strain": "strain=AcRS2",
                "accession": "GCA_013389365.1",
                "taxid": 2292,
                "species_taxid": 2292,
                "relation_to_type": "type",
                "validated": true,
                "ani": 85.5666,
                "matched_fragments": 758,
                "total_fragments": 1324,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_000233695.2",
                "gtdb_species": "s__Desulfobacter postgatei",
                "ani": 100.0,
                "matched_fragments": 1324,
                "total_fragments": 1324,
                "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Desulfobacteria;o__Desulfobacterales;f__Desulfobacteraceae;g__Desulfobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.23",
                "min_intra_species_ani": "96.02",
                "mean_intra_species_af": "0.82",
                "min_intra_species_af": "0.77",
                "num_clustered_genomes": 7,
                "status": "conclusive"
            },
            {
                "accession": "GCA_003252055.1",
                "gtdb_species": "s__Desulfobacter postgatei_B",
                "ani": 87.2982,
                "matched_fragments": 558,
                "total_fragments": 1324,
                "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Desulfobacteria;o__Desulfobacterales;f__Desulfobacteraceae;g__Desulfobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_004319545.1",
                "gtdb_species": "s__Desulfobacter hydrogenophilus",
                "ani": 86.5163,
                "matched_fragments": 909,
                "total_fragments": 1324,
                "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Desulfobacteria;o__Desulfobacterales;f__Desulfobacteraceae;g__Desulfobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.99",
                "min_intra_species_ani": "99.99",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_000745975.1",
                "gtdb_species": "s__Desulfobacter vibrioformis",
                "ani": 86.4057,
                "matched_fragments": 785,
                "total_fragments": 1324,
                "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Desulfobacteria;o__Desulfobacterales;f__Desulfobacteraceae;g__Desulfobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000373985.1",
                "gtdb_species": "s__Desulfobacter curvatus",
                "ani": 85.9356,
                "matched_fragments": 865,
                "total_fragments": 1324,
                "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Desulfobacteria;o__Desulfobacterales;f__Desulfobacteraceae;g__Desulfobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_013389365.1",
                "gtdb_species": "s__Desulfobacter latus",
                "ani": 85.5609,
                "matched_fragments": 759,
                "total_fragments": 1324,
                "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Desulfobacteria;o__Desulfobacterales;f__Desulfobacteraceae;g__Desulfobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": 0.06,
        "cell_length": 0.495,
        "doubling_h": 1.379,
        "growth_tmp": 31.0,
        "optimum_tmp": 26.5,
        "optimum_ph": 7.25,
        "genome_size": 3974658.0,
        "gc_content": 46.9,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 1.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 1.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Desulfobacter",
        "postgatei",
        "2ac9"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}