{
    "type": "genome",
    "identifier": "GCF_000235425.2",
    "organism": "Pseudofrankia saprophytica",
    "title": "Pseudofrankia saprophytica",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "DOE Joint Genome Institute",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_000235425.2",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN02256511",
        "wgs_master": "AGJN00000000.2",
        "refseq_category": "reference genome",
        "taxid": "298655",
        "species_taxid": "298655",
        "organism_name": "Pseudofrankia saprophytica",
        "infraspecific_name": "strain=CN3",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2014/01/16",
        "asm_name": "ASM23542v3",
        "asm_submitter": "DOE Joint Genome Institute",
        "gbrs_paired_asm": "GCA_000235425.3",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/235/425/GCF_000235425.2_ASM23542v3",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "9978592",
        "genome_size_ungapped": "9966592",
        "gc_percent": "72.000000",
        "replicon_count": "0",
        "scaffold_count": "2",
        "contig_count": "122",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_000235425.2-RS_2024_04_29",
        "annotation_date": "2024-04-29",
        "total_gene_count": "8250",
        "protein_coding_gene_count": "7991",
        "non_coding_gene_count": "74",
        "pubmed_id": "23516212"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2014-01-16",
    "dateModified": "2014-01-16",
    "datePublished": "2014-01-16",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Pseudofrankia saprophytica"
        ],
        "sample_taxid": [
            "298655"
        ],
        "sample_host_organism": [
            "Coriaria nepalensis"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [
            "None"
        ],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Pakistan"
        ],
        "sample_host_location_id": [],
        "data_size": "2.667 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 95.83,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
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    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "9978592",
        "Number of Sequences": "2",
        "Longest Sequences (bp)": "8190446",
        "N50 (bp)": "8190446",
        "Gap Ratio (%)": "0.120277",
        "GCcontent (%)": "71.8",
        "Number of CDSs": "8323",
        "Average Protein Length": "340.1",
        "Coding Ratio (%)": "85.1",
        "Number of rRNAs": "3",
        "Number of tRNAs": "85",
        "Number of CRISPRs": "2"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Frankia saprophytica",
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                "relation_to_type": "type",
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            {
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                "status": "below_threshold"
            },
            {
                "organism_name": "Frankia irregularis",
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            {
                "organism_name": "Frankia elaeagni",
                "strain": "strain=BMG5.12",
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            },
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                "ani_threshold": 95,
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            },
            {
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                "relation_to_type": "type",
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                "ani_threshold": 95,
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            },
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                "status": "below_threshold"
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                "accession": "GCF_000235425.2",
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                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Frankiaceae;g__Frankia",
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        ]
    },
    "_bac2feature": {
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    "_genome_taxon": [
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    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}