{ "type": "genome", "identifier": "GCF_000235885.1", "organism": "Leyella stercorea DSM 18206", "title": "Leyella stercorea DSM 18206", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Washington University Genome Center", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000235885.1", "bioproject": "PRJNA224116", "biosample": "SAMN02299453", "wgs_master": "AFZZ00000000.1", "refseq_category": "reference genome", "taxid": "1002367", "species_taxid": "363265", "organism_name": "Leyella stercorea DSM 18206", "infraspecific_name": "strain=DSM 18206", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2011/11/18", "asm_name": "ASM23588v1", "asm_submitter": "Washington University Genome Center", "gbrs_paired_asm": "GCA_000235885.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/235/885/GCF_000235885.1_ASM23588v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3097322", "genome_size_ungapped": "3092669", "gc_percent": "49.000000", "replicon_count": "0", "scaffold_count": "148", "contig_count": "263", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000235885.1-RS_2025_01_08", "annotation_date": "2025-01-08", "total_gene_count": "2708", "protein_coding_gene_count": "2591", "non_coding_gene_count": "56", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2011-11-18", "dateModified": "2011-11-18", "datePublished": "2011-11-18", "_annotation": { "sample_count": 1, "sample_organism": [ "Leyella stercorea DSM 18206" ], "sample_taxid": [ "1002367" ], "sample_host_organism": [ "Homo sapiens" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "not determined" ], "sample_host_location_id": [], "data_size": "0.884 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3097322", "Number of Sequences": "148", "Longest Sequences (bp)": "164580", "N50 (bp)": "53811", "Gap Ratio (%)": "0.150227", "GCcontent (%)": "49.0", "Number of CDSs": "2519", "Average Protein Length": "346.2", "Coding Ratio (%)": "84.5", "Number of rRNAs": "1", "Number of tRNAs": "48", "Number of CRISPRs": "7" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Prevotella stercorea", "strain": "strain=DSM 18206", "accession": "GCA_000235885.1", "taxid": 363265, "species_taxid": 363265, 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"organism_name": "Hallella faecis", "strain": "strain=CLA-AA-H145", "accession": "GCA_018789675.1", "taxid": 2841596, "species_taxid": 2841596, "relation_to_type": "type", "validated": true, "ani": 77.4568, "matched_fragments": 174, "total_fragments": 958, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella intermedia", "strain": "strain=ATCC 25611", "accession": "GCA_000519165.1", "taxid": 28131, "species_taxid": 28131, "relation_to_type": "type", "validated": true, "ani": 77.3951, "matched_fragments": 54, "total_fragments": 958, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella intermedia", "strain": "strain=DSM 20706", "accession": "GCA_000439065.1", "taxid": 28131, "species_taxid": 28131, "relation_to_type": "type", "validated": true, "ani": 77.3467, "matched_fragments": 54, "total_fragments": 958, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella lacticifex", "strain": "strain=R5019", 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