{ "type": "genome", "identifier": "GCF_000235975.1", "organism": "Novosphingobium pentaromativorans US6-1", "title": "Novosphingobium pentaromativorans US6-1", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Korea Ocean Research & Development Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000235975.1", "bioproject": "PRJNA224116", "biosample": "SAMN02470157", "wgs_master": "AGFM00000000.1", "refseq_category": "na", "taxid": "1088721", "species_taxid": "205844", "organism_name": "Novosphingobium pentaromativorans US6-1", "infraspecific_name": "strain=US6-1", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2011/11/21", "asm_name": "ASM23597v1", "asm_submitter": "Korea Ocean Research & Development Institute", "gbrs_paired_asm": "GCA_000235975.2", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/235/975/GCF_000235975.1_ASM23597v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5344974", "genome_size_ungapped": "5344974", "gc_percent": "63.000000", "replicon_count": "2", "scaffold_count": "123", "contig_count": "123", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000235975.1-RS_2024_03_27", "annotation_date": "2024-03-27", "total_gene_count": "5101", "protein_coding_gene_count": "4963", "non_coding_gene_count": "55", "pubmed_id": "22275104" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2011-11-21", "dateModified": "2011-11-21", "datePublished": "2011-11-21", "_annotation": { "sample_count": 1, "sample_organism": [ "Novosphingobium pentaromativorans US6-1" ], "sample_taxid": [ "1088721" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [], "sample_host_location_id": [], "data_size": "1.497 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5344974", "Number of Sequences": "123", "Longest Sequences (bp)": "263131", "N50 (bp)": "117882", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "63.1", "Number of CDSs": "4946", "Average Protein Length": "312.0", "Coding Ratio (%)": "86.6", "Number of rRNAs": "3", "Number of tRNAs": "51", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Novosphingobium pentaromativorans", "strain": "strain=US6-1", "accession": "GCA_000235975.2", "taxid": 205844, "species_taxid": 205844, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1717, "total_fragments": 1721, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Novosphingobium pentaromativorans", "strain": "strain=US6-1", "accession": "GCA_000767465.1", "taxid": 205844, "species_taxid": 205844, "relation_to_type": "type", "validated": true, "ani": 99.9981, "matched_fragments": 1715, "total_fragments": 1721, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Novosphingobium mathurense", "strain": "strain=SM117", "accession": "GCA_900168325.1", "taxid": 428990, "species_taxid": 428990, "relation_to_type": "type", "validated": true, "ani": 89.4757, "matched_fragments": 991, "total_fragments": 1721, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium naphthalenivorans", "strain": "strain=NBRC 102051", "accession": "GCA_001590985.1", "taxid": 273168, "species_taxid": 273168, "relation_to_type": "type", "validated": true, "ani": 82.4676, "matched_fragments": 702, "total_fragments": 1721, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium endophyticum", "strain": "strain=CGMCC 1.15095", "accession": "GCA_014640675.1", "taxid": 1955250, "species_taxid": 1955250, "relation_to_type": "type", "validated": true, "ani": 82.1215, "matched_fragments": 673, "total_fragments": 1721, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium indicum", "strain": "strain=CGMCC 1.6784", "accession": "GCA_014645195.1", "taxid": 462949, "species_taxid": 462949, "relation_to_type": "type", "validated": true, "ani": 81.8664, "matched_fragments": 708, "total_fragments": 1721, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium aureum", "strain": "strain=YJ-S2-02", "accession": "GCA_015865035.1", "taxid": 2792964, "species_taxid": 2792964, "relation_to_type": "type", "validated": true, "ani": 81.4786, "matched_fragments": 592, "total_fragments": 1721, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium barchaimii", "strain": "strain=LL02", "accession": "GCA_001046635.1", "taxid": 1420591, "species_taxid": 1420591, "relation_to_type": "type", "validated": true, "ani": 81.0393, "matched_fragments": 616, "total_fragments": 1721, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium profundi", "strain": "strain=F72", "accession": "GCA_018491765.1", "taxid": 1774954, "species_taxid": 1774954, "relation_to_type": "type", "validated": true, "ani": 81.0263, "matched_fragments": 627, "total_fragments": 1721, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium decolorationis", "strain": "strain=502str22", "accession": "GCA_018417475.1", "taxid": 2698673, "species_taxid": 2698673, "relation_to_type": "type", "validated": true, "ani": 80.8365, "matched_fragments": 619, "total_fragments": 1721, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium guangzhouense", "strain": "strain=SA925", "accession": "GCA_002896965.1", "taxid": 1850347, "species_taxid": 1850347, "relation_to_type": "type", "validated": true, "ani": 80.5708, "matched_fragments": 587, "total_fragments": 1721, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium silvae", "strain": "strain=FGD1", "accession": "GCA_009856825.1", "taxid": 2692619, "species_taxid": 2692619, "relation_to_type": "type", "validated": true, "ani": 80.5031, "matched_fragments": 555, "total_fragments": 1721, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium huizhouense", "strain": "strain=c7", "accession": "GCA_020179475.1", "taxid": 2866625, "species_taxid": 2866625, "relation_to_type": "type", "validated": true, "ani": 79.8868, "matched_fragments": 444, "total_fragments": 1721, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium percolationis", "strain": "strain=c1", "accession": "GCA_020179425.1", "taxid": 2871811, "species_taxid": 2871811, "relation_to_type": "type", "validated": true, "ani": 79.7767, "matched_fragments": 494, "total_fragments": 1721, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pelagerythrobacter aerophilus", "strain": "strain=Ery1", "accession": "GCA_003581645.1", "taxid": 2306995, "species_taxid": 2306995, "relation_to_type": "type", "validated": true, "ani": 79.1388, "matched_fragments": 363, "total_fragments": 1721, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000767465.1", "gtdb_species": "s__Novosphingobium pentaromativorans", "ani": 99.9981, "matched_fragments": 1715, "total_fragments": 1721, "gtdb_taxonomy": 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