{ "type": "genome", "identifier": "GCF_000236565.1", "organism": "Mesorhizobium alhagi CCNWXJ12-2", "title": "Mesorhizobium alhagi CCNWXJ12-2", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Northwest A&F University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000236565.1", "bioproject": "PRJNA224116", "biosample": "SAMN02470709", "wgs_master": "AHAM00000000.1", "refseq_category": "reference genome", "taxid": "1107882", "species_taxid": "475067", "organism_name": "Mesorhizobium alhagi CCNWXJ12-2", "infraspecific_name": "strain=CCNWXJ12-2", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2011/12/01", "asm_name": "ASM23656v2", "asm_submitter": "Northwest A&F University", "gbrs_paired_asm": "GCA_000236565.2", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/236/565/GCF_000236565.1_ASM23656v2", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "6968952", "genome_size_ungapped": "6968952", "gc_percent": "62.500000", "replicon_count": "0", "scaffold_count": "375", "contig_count": "375", "annotation_provider": "NCBI RefSeq", "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)", "annotation_date": "2023-04-24", "total_gene_count": "7052", "protein_coding_gene_count": "6640", "non_coding_gene_count": "52", "pubmed_id": "22328758" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2011-12-01", "dateModified": "2011-12-01", "datePublished": "2011-12-01", "_annotation": { "sample_count": 1, "sample_organism": [ "Mesorhizobium alhagi CCNWXJ12-2" ], "sample_taxid": [ "1107882" ], "sample_host_organism": [ "Alhagi sparsifolia" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China" ], "sample_host_location_id": [], "data_size": "1.954 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.38, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "6968952", "Number of Sequences": "375", "Longest Sequences (bp)": "159162", "N50 (bp)": "35501", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "62.7", "Number of CDSs": "6549", "Average Protein Length": "286.9", "Coding Ratio (%)": "80.9", "Number of rRNAs": "3", "Number of tRNAs": "51", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Mesorhizobium alhagi", "strain": "strain=CCNWXJ12-2", "accession": "GCA_000236565.2", "taxid": 475067, "species_taxid": 475067, "relation_to_type": "type", "validated": 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982, "total_fragments": 2150, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesorhizobium metallidurans", "strain": "strain=STM 2683", "accession": "GCA_000350085.1", "taxid": 489722, "species_taxid": 489722, "relation_to_type": "type", "validated": true, "ani": 80.9128, "matched_fragments": 887, "total_fragments": 2150, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesorhizobium tamadayense", "strain": "strain=DSM 28320", "accession": "GCA_003863365.1", "taxid": 425306, "species_taxid": 425306, "relation_to_type": "type", "validated": true, "ani": 80.9113, "matched_fragments": 929, "total_fragments": 2150, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesorhizobium onobrychidis", "strain": "strain=OM4", "accession": "GCA_024707545.1", "taxid": 2775404, "species_taxid": 2775404, "relation_to_type": "type", "validated": true, "ani": 80.8601, "matched_fragments": 964, "total_fragments": 2150, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesorhizobium caraganae", "strain": "strain=LMG 24397", "accession": "GCA_016836705.1", "taxid": 483206, "species_taxid": 483206, "relation_to_type": "type", "validated": true, "ani": 80.8541, "matched_fragments": 932, "total_fragments": 2150, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesorhizobium waimense", "strain": "strain=ICMP19557", "accession": "GCA_003601975.1", "taxid": 1300307, "species_taxid": 1300307, "relation_to_type": "type", "validated": true, "ani": 80.7778, "matched_fragments": 988, "total_fragments": 2150, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesorhizobium norvegicum", "strain": "strain=10.2.2", "accession": "GCA_004919685.1", "taxid": 1085774, "species_taxid": 1085774, "relation_to_type": "type", "validated": true, "ani": 80.7402, "matched_fragments": 938, "total_fragments": 2150, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesorhizobium loti", "strain": "strain=DSM 2626", "accession": "GCA_003148495.1", "taxid": 381, "species_taxid": 381, "relation_to_type": "suspected-type", "validated": true, "ani": 80.7254, "matched_fragments": 923, "total_fragments": 2150, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesorhizobium opportunistum", "strain": "strain=WSM2075", "accession": "GCA_000176035.2", "taxid": 593909, "species_taxid": 593909, "relation_to_type": "type", "validated": true, "ani": 80.5987, "matched_fragments": 917, "total_fragments": 2150, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesorhizobium carmichaelinearum", "strain": "strain=ICMP 18942", "accession": "GCA_900199455.1", "taxid": 1208188, "species_taxid": 1208188, "relation_to_type": "type", "validated": true, "ani": 80.5719, "matched_fragments": 953, "total_fragments": 2150, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesorhizobium 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