{
    "type": "genome",
    "identifier": "GCF_000236805.1",
    "organism": "Paenibacillus peoriae KCTC 3763",
    "title": "Paenibacillus peoriae KCTC 3763",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Korea Research Institute of Bioscience & Biotechnology",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_000236805.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN02470185",
        "wgs_master": "AGFX00000000.1",
        "refseq_category": "reference genome",
        "taxid": "1087481",
        "species_taxid": "59893",
        "organism_name": "Paenibacillus peoriae KCTC 3763",
        "infraspecific_name": "strain=KCTC 3763",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2011/12/05",
        "asm_name": "PPe03",
        "asm_submitter": "Korea Research Institute of Bioscience & Biotechnology",
        "gbrs_paired_asm": "GCA_000236805.2",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/236/805/GCF_000236805.1_PPe03",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "5771987",
        "genome_size_ungapped": "5771987",
        "gc_percent": "46.500000",
        "replicon_count": "1",
        "scaffold_count": "49",
        "contig_count": "49",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_000236805.1-RS_2024_04_04",
        "annotation_date": "2024-04-04",
        "total_gene_count": "5185",
        "protein_coding_gene_count": "5002",
        "non_coding_gene_count": "97",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2011-12-05",
    "dateModified": "2011-12-05",
    "datePublished": "2011-12-05",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Paenibacillus peoriae KCTC 3763"
        ],
        "sample_taxid": [
            "1087481"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [],
        "sample_host_location_id": [],
        "data_size": "1.650 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "5771987",
        "Number of Sequences": "49",
        "Longest Sequences (bp)": "902703",
        "N50 (bp)": "276721",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "46.4",
        "Number of CDSs": "5128",
        "Average Protein Length": "318.1",
        "Coding Ratio (%)": "84.8",
        "Number of rRNAs": "2",
        "Number of tRNAs": "82",
        "Number of CRISPRs": "9"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Paenibacillus peoriae",
                "strain": "strain=KCTC 3763",
                "accession": "GCA_000236805.2",
                "taxid": 59893,
                "species_taxid": 59893,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1901,
                "total_fragments": 1902,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Paenibacillus kribbensis",
                "strain": "strain=AM49",
                "accession": "GCA_002240415.1",
                "taxid": 172713,
                "species_taxid": 172713,
                "relation_to_type": "type",
                "validated": true,
                "ani": 94.6923,
                "matched_fragments": 1634,
                "total_fragments": 1902,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paenibacillus farraposensis",
                "strain": "strain=UY79",
                "accession": "GCA_020736845.1",
                "taxid": 2807095,
                "species_taxid": 2807095,
                "relation_to_type": "type",
                "validated": true,
                "ani": 88.7832,
                "matched_fragments": 1289,
                "total_fragments": 1902,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paenibacillus maysiensis",
                "strain": "strain=1-49",
                "accession": "GCA_000520815.1",
                "taxid": 1155954,
                "species_taxid": 1155954,
                "relation_to_type": "type",
                "validated": true,
                "ani": 86.2394,
                "matched_fragments": 1251,
                "total_fragments": 1902,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paenibacillus polymyxa",
                "strain": "strain=ATCC 842",
                "accession": "GCA_022811565.1",
                "taxid": 1406,
                "species_taxid": 1406,
                "relation_to_type": "type",
                "validated": true,
                "ani": 85.9039,
                "matched_fragments": 1339,
                "total_fragments": 1902,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paenibacillus polymyxa",
                "strain": "strain=NCTC10343",
                "accession": "GCA_900454525.1",
                "taxid": 1406,
                "species_taxid": 1406,
                "relation_to_type": "type",
                "validated": true,
                "ani": 85.8306,
                "matched_fragments": 1353,
                "total_fragments": 1902,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paenibacillus polymyxa",
                "strain": "strain=ATCC 842",
                "accession": "GCA_000217775.1",
                "taxid": 1406,
                "species_taxid": 1406,
                "relation_to_type": "type",
                "validated": true,
                "ani": 85.8115,
                "matched_fragments": 1353,
                "total_fragments": 1902,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paenibacillus ottowii",
                "strain": "strain=MS2379",
                "accession": "GCA_006874425.1",
                "taxid": 2315729,
                "species_taxid": 2315729,
                "relation_to_type": "type",
                "validated": true,
                "ani": 85.3471,
                "matched_fragments": 1317,
                "total_fragments": 1902,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paenibacillus mendelii",
                "strain": "strain=C/2",
                "accession": "GCA_024498075.1",
                "taxid": 206163,
                "species_taxid": 206163,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.0675,
                "matched_fragments": 72,
                "total_fragments": 1902,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paenibacillus chitinolyticus",
                "strain": "strain=NBRC 15660",
                "accession": "GCA_000739915.1",
                "taxid": 79263,
                "species_taxid": 79263,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.9663,
                "matched_fragments": 76,
                "total_fragments": 1902,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paenibacillus piscarius",
                "strain": "strain=P121",
                "accession": "GCA_022234545.1",
                "taxid": 1089681,
                "species_taxid": 1089681,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.6918,
                "matched_fragments": 109,
                "total_fragments": 1902,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_000236805.1",
                "gtdb_species": "s__Paenibacillus peoriae",
                "ani": 100.0,
                "matched_fragments": 1901,
                "total_fragments": 1902,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Paenibacillales;f__Paenibacillaceae;g__Paenibacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCF_002240415.1",
                "gtdb_species": "s__Paenibacillus kribbensis",
                "ani": 94.6857,
                "matched_fragments": 1636,
                "total_fragments": 1902,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Paenibacillales;f__Paenibacillaceae;g__Paenibacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.18",
                "min_intra_species_ani": "95.13",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.86",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCF_009363115.1",
                "gtdb_species": "s__Paenibacillus brasilensis",
                "ani": 90.8979,
                "matched_fragments": 1370,
                "total_fragments": 1902,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Paenibacillales;f__Paenibacillaceae;g__Paenibacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.95",
                "min_intra_species_ani": "97.95",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.90",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_001719045.1",
                "gtdb_species": "s__Paenibacillus polymyxa_B",
                "ani": 86.9269,
                "matched_fragments": 1393,
                "total_fragments": 1902,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Paenibacillales;f__Paenibacillaceae;g__Paenibacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.14",
                "min_intra_species_ani": "95.58",
                "mean_intra_species_af": "0.87",
                "min_intra_species_af": "0.84",
                "num_clustered_genomes": 27,
                "status": "-"
            },
            {
                "accession": "GCF_001709075.1",
                "gtdb_species": "s__Paenibacillus polymyxa_D",
                "ani": 86.7465,
                "matched_fragments": 1357,
                "total_fragments": 1902,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Paenibacillales;f__Paenibacillaceae;g__Paenibacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.80",
                "min_intra_species_ani": "97.93",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.90",
                "num_clustered_genomes": 8,
                "status": "-"
            },
            {
                "accession": "GCF_000943545.1",
                "gtdb_species": "s__Paenibacillus terrae_A",
                "ani": 86.5165,
                "matched_fragments": 1405,
                "total_fragments": 1902,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Paenibacillales;f__Paenibacillaceae;g__Paenibacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_005217525.1",
                "gtdb_species": "s__Paenibacillus terrae_C",
                "ani": 86.1238,
                "matched_fragments": 1368,
                "total_fragments": 1902,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Paenibacillales;f__Paenibacillaceae;g__Paenibacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000237325.1",
                "gtdb_species": "s__Paenibacillus polymyxa_C",
                "ani": 85.8246,
                "matched_fragments": 1370,
                "total_fragments": 1902,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Paenibacillales;f__Paenibacillaceae;g__Paenibacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.50",
                "min_intra_species_ani": "97.87",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 15,
                "status": "-"
            },
            {
                "accession": "GCF_015710975.1",
                "gtdb_species": "s__Paenibacillus polymyxa",
                "ani": 85.7756,
                "matched_fragments": 1356,
                "total_fragments": 1902,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Paenibacillales;f__Paenibacillaceae;g__Paenibacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.54",
                "min_intra_species_ani": "98.07",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 44,
                "status": "-"
            },
            {
                "accession": "GCF_006874425.1",
                "gtdb_species": "s__Paenibacillus ottowii",
                "ani": 85.3235,
                "matched_fragments": 1320,
                "total_fragments": 1902,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Paenibacillales;f__Paenibacillaceae;g__Paenibacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.10",
                "min_intra_species_ani": "96.87",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 5,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.187,
        "cell_length": 0.433,
        "doubling_h": 0.565,
        "growth_tmp": 30.0,
        "optimum_tmp": 30.0,
        "optimum_ph": 7.238,
        "genome_size": 6054535.0,
        "gc_content": 45.474,
        "coding_genes": 5074.0,
        "rRNA16S_genes": 13.0,
        "tRNA_genes": 99.0,
        "gram_stain": 1.0,
        "sporulation": 1.0,
        "motility": 1.0,
        "range_salinity": 0.0,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": 0.9,
        "thermophilic_range_tmp": 0.033,
        "psychrophilic_range_tmp": 0.066,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Paenibacillus",
        "peoriae",
        "KCTC",
        "3763"
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}