{ "type": "genome", "identifier": "GCF_000237065.1", "organism": "Pseudomonas ogarae", "title": "Pseudomonas ogarae", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Universidad Aut\u00f3noma de Madrid", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000237065.1", "bioproject": "PRJNA224116", "biosample": "SAMN02604099", "wgs_master": "na", "refseq_category": "na", "taxid": "1114970", "species_taxid": "1114970", "organism_name": "Pseudomonas ogarae", "infraspecific_name": "strain=F113", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2011/12/09", "asm_name": "ASM23706v1", "asm_submitter": "Universidad Aut\u00f3noma de Madrid", "gbrs_paired_asm": "GCA_000237065.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/237/065/GCF_000237065.1_ASM23706v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "6845832", "genome_size_ungapped": "6845832", "gc_percent": "61.000000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000237065.1-RS_2024_09_05", "annotation_date": "2024-09-05", "total_gene_count": "6151", "protein_coding_gene_count": "5969", "non_coding_gene_count": "85", "pubmed_id": "22328765" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2011-12-09", "dateModified": "2011-12-09", "datePublished": "2011-12-09", "_annotation": { "sample_count": 1, "sample_organism": [ "Pseudomonas ogarae" ], "sample_taxid": [ "1114970" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [], "sample_host_location_id": [], "data_size": "1.910 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "6845832", "Number of Sequences": "1", "Longest Sequences (bp)": "6845832", "N50 (bp)": "6845832", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "60.8", "Number of CDSs": "6014", "Average Protein Length": "333.5", "Coding Ratio (%)": "87.9", "Number of rRNAs": "16", "Number of tRNAs": "67", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Pseudomonas kilonensis", "strain": "strain=DSM 13647", "accession": "GCA_001269885.1", "taxid": 132476, "species_taxid": 132476, "relation_to_type": "type", "validated": true, "ani": 95.9503, "matched_fragments": 1841, "total_fragments": 2281, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Pseudomonas brassicacearum subsp. brassicacearum", "strain": "strain=CCUG 51508", "accession": "GCA_008801605.1", "taxid": 86264, "species_taxid": 930166, "relation_to_type": "type", "validated": true, "ani": 95.1694, "matched_fragments": 1926, "total_fragments": 2281, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Pseudomonas brassicacearum", "strain": "strain=JCM 11938", "accession": "GCA_012034345.1", "taxid": 930166, "species_taxid": 930166, "relation_to_type": "suspected-type", "validated": true, "ani": 95.1493, "matched_fragments": 1928, "total_fragments": 2281, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Pseudomonas thivervalensis", "strain": "strain=DSM 13194", "accession": "GCA_001269655.1", "taxid": 86265, "species_taxid": 86265, "relation_to_type": "type", "validated": true, "ani": 92.4588, "matched_fragments": 1844, "total_fragments": 2281, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas bijieensis", "strain": "strain=L22-9", "accession": "GCA_013347965.1", "taxid": 2681983, "species_taxid": 2681983, "relation_to_type": "type", "validated": true, "ani": 92.1287, "matched_fragments": 1876, "total_fragments": 2281, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas zanjanensis", "strain": "strain=SWRI12", "accession": "GCA_014268745.2", "taxid": 2745496, "species_taxid": 2745496, "relation_to_type": "type", "validated": true, "ani": 91.8802, "matched_fragments": 1766, "total_fragments": 2281, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas viciae", "strain": "strain=11K1", "accession": "GCA_004786035.1", "taxid": 2505979, "species_taxid": 2505979, "relation_to_type": "type", "validated": true, "ani": 90.0691, "matched_fragments": 1797, "total_fragments": 2281, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas rhizophila", "strain": "strain=S211", "accession": "GCA_003033885.1", "taxid": 2045200, "species_taxid": 2045200, "relation_to_type": "type", "validated": true, "ani": 88.6913, "matched_fragments": 1676, "total_fragments": 2281, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas marvdashtae", "strain": "strain=SWRI102", "accession": "GCA_014268655.2", "taxid": 2745500, "species_taxid": 2745500, "relation_to_type": "type", "validated": true, "ani": 88.3252, "matched_fragments": 1582, "total_fragments": 2281, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas tehranensis", "strain": "strain=SWRI196", "accession": "GCA_014268615.1", "taxid": 2745502, "species_taxid": 2745502, "relation_to_type": "type", "validated": true, "ani": 88.146, "matched_fragments": 1448, "total_fragments": 2281, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas pharyngis", "strain": "strain=BML-PP036", "accession": "GCA_021602345.1", "taxid": 2892333, "species_taxid": 2892333, "relation_to_type": "type", "validated": true, "ani": 84.5926, "matched_fragments": 1344, "total_fragments": 2281, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas germanica", "strain": "strain=FIT28", "accession": "GCA_019614655.1", "taxid": 2815720, "species_taxid": 2815720, "relation_to_type": "type", "validated": true, "ani": 83.7307, "matched_fragments": 1347, "total_fragments": 2281, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas pergaminensis", "strain": "strain=1008", "accession": "GCA_024112395.1", "taxid": 2853159, "species_taxid": 2853159, "relation_to_type": "type", "validated": true, "ani": 83.414, "matched_fragments": 1251, "total_fragments": 2281, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas lurida", "strain": "strain=LMG 21995", "accession": "GCA_002563895.1", "taxid": 244566, "species_taxid": 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