{
    "type": "genome",
    "identifier": "GCF_000237085.1",
    "organism": "Acetivibrio clariflavus DSM 19732",
    "title": "Acetivibrio clariflavus DSM 19732",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "JGI",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_000237085.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN02261428",
        "wgs_master": "na",
        "refseq_category": "reference genome",
        "taxid": "720554",
        "species_taxid": "288965",
        "organism_name": "Acetivibrio clariflavus DSM 19732",
        "infraspecific_name": "strain=DSM 19732",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Complete Genome",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2011/12/12",
        "asm_name": "ASM23708v1",
        "asm_submitter": "JGI",
        "gbrs_paired_asm": "GCA_000237085.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/237/085/GCF_000237085.1_ASM23708v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "4897678",
        "genome_size_ungapped": "4897678",
        "gc_percent": "35.500000",
        "replicon_count": "1",
        "scaffold_count": "1",
        "contig_count": "1",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_000237085.1-RS_2024_03_28",
        "annotation_date": "2024-03-28",
        "total_gene_count": "4222",
        "protein_coding_gene_count": "4047",
        "non_coding_gene_count": "83",
        "pubmed_id": "22675603"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2011-12-12",
    "dateModified": "2011-12-12",
    "datePublished": "2011-12-12",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Acetivibrio clariflavus DSM 19732"
        ],
        "sample_taxid": [
            "720554"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Japan"
        ],
        "sample_host_location_id": [],
        "data_size": "1.353 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "4897678",
        "Number of Sequences": "1",
        "Longest Sequences (bp)": "4897678",
        "N50 (bp)": "4897678",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "35.7",
        "Number of CDSs": "4279",
        "Average Protein Length": "315.8",
        "Coding Ratio (%)": "82.8",
        "Number of rRNAs": "18",
        "Number of tRNAs": "60",
        "Number of CRISPRs": "3"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Acetivibrio clariflavus",
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                "accession": "GCA_000237085.1",
                "taxid": 288965,
                "species_taxid": 288965,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1631,
                "total_fragments": 1632,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Pseudoclostridium thermosuccinogenes",
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                "accession": "GCA_002896855.1",
                "taxid": 84032,
                "species_taxid": 84032,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 119,
                "total_fragments": 1632,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Acetivibrio mesophilus",
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                "species_taxid": 2487273,
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                "total_fragments": 1632,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Acetivibrio cellulolyticus",
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                "species_taxid": 35830,
                "relation_to_type": "type",
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                "total_fragments": 1632,
                "ani_threshold": 95,
                "status": "below_threshold"
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        ],
        "cc_result": {
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            "contamination": 0.0,
            "strain_heterogeneity": 0.0
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                "accession": "GCF_000237085.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Acetivibrionales;f__Acetivibrionaceae;g__Acetivibrio",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.23",
                "min_intra_species_ani": "96.28",
                "mean_intra_species_af": "0.88",
                "min_intra_species_af": "0.88",
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            },
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Acetivibrionales;f__DSM-27016;g__Pseudoclostridium",
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                "mean_intra_species_af": "0.95",
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            },
            {
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                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.61",
                "min_intra_species_ani": "99.52",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.90",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCA_012519925.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Acetivibrionales;f__Acetivibrionaceae;g__Acetivibrio",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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            },
            {
                "accession": "GCA_001512505.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Acetivibrionales;f__Acetivibrionaceae;g__Hungateiclostridium",
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                "mean_intra_species_ani": "99.73",
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                "min_intra_species_af": "0.91",
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            },
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                "mean_intra_species_ani": "N/A",
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            {
                "accession": "GCF_003337415.1",
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        ]
    },
    "_bac2feature": {
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        "cell_diameter": -0.412,
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        "doubling_h": null,
        "growth_tmp": 37.0,
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        "genome_size": 4895402.0,
        "gc_content": 35.54,
        "coding_genes": null,
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        "mesophilic_range_tmp": 1.0,
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        "bacillus_cell_shape": 1.0,
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        "coccobacillus_cell_shape": 0.0,
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    "_genome_taxon": [
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        "clariflavus",
        "DSM",
        "19732"
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    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}