# locus_id	locus_tag	location	classification	internal_stop	indel	ref_id	description	query_cov	ref_cov	identity
MGA_17	LOCUS_00150	sequence1:24646..24885(+)	frameshift		24876	WP_011388969.1	2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	96.2	17.6	43.4
MGA_27	LOCUS_00250	sequence1:34849..35523(-)	frameshift		35546	WP_000393283.1	GTPase HflX	90.2	47.7	46.0
MGA_28	LOCUS_00260	sequence1:35478..36131(-)	frameshift		35549	WP_000393283.1	GTPase HflX	86.2	44.4	48.1
MGA_40	LOCUS_00380	sequence1:46828..47127(+)	partial			WP_010965540.1	metalloregulator ArsR/SmtB family transcription factor	90.9	73.8	60.0
MGA_41	LOCUS_00390	sequence1:47168..47386(+)	partial			WP_002327795.1	heavy metal translocating P-type ATPase	93.1	9.8	44.1
MGA_74	LOCUS_00720	sequence1:81842..84397(+)	partial			WP_004190216.1	Cna B-type domain-containing protein	60.2	73.7	25.2
MGA_95	LOCUS_00930	sequence1:109771..110988(-)	partial			WP_010964394.1	hypothetical protein	88.9	12.9	25.6
MGA_97	LOCUS_00950	sequence1:112209..112907(-)	partial			WP_029494586.1	RluA family pseudouridine synthase	89.7	65.6	30.9
MGA_104	LOCUS_01020	sequence1:121285..121848(+)	partial			WP_002680301.1	ABC transporter ATP-binding protein	98.9	62.2	43.3
MGA_109	LOCUS_01070	sequence1:126140..127765(+)	partial			WP_003244566.1	two-component system response regulator YesN	29.0	42.7	36.3
MGA_113	LOCUS_01110	sequence1:131069..131794(+)	frameshift		131060	WP_002215885.1	galactose/glucose ABC transporter substrate-binding protein MglB	95.9	65.7	39.3
MGA_129	LOCUS_01270	sequence1:143845..144060(+)	partial			WP_003356112.1	ATP synthase F0 subunit C	77.5	69.6	63.6
MGA_140	LOCUS_01380	sequence1:156121..156972(+)	partial			WP_002298830.1	bifunctional lysozyme/C40 family peptidase	62.2	53.0	48.0
MGA_141	LOCUS_01390	sequence1:157091..158893(+)	partial			WP_003233892.1	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	36.5	46.0	56.2
MGA_143	LOCUS_01410	sequence1:159348..159578(+)	partial			WP_045000370.1	replication initiator protein A	65.8	19.7	70.6
MGA_149	LOCUS_01470	sequence1:165115..165309(-)	partial			WP_011861371.1	relaxase/mobilization nuclease domain-containing protein	65.6	9.5	90.5
MGA_162	LOCUS_01600	sequence1:176917..177153(+)	internal_stop_codon	176863..176865(+)		WP_011860801.1	MATE family efflux transporter	76.9	13.3	88.3
MGA_172	LOCUS_01700	sequence1:187542..187790(+)	frameshift,internal_stop_codon	187860..187862(+)	187706	WP_003233892.1	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	75.6	11.8	54.8
MGA_178	LOCUS_01760	sequence1:191772..192032(+)	internal_stop_codon	191557..191559(+)		WP_037328452.1	membrane protein	95.3	19.7	43.4
MGA_189	LOCUS_01870	sequence1:201484..202212(-)	partial			WP_011860908.1	ABC transporter ATP-binding protein	93.4	74.3	62.4
MGA_200	LOCUS_01980	sequence1:214874..215464(-)	partial			WP_044304031.1	oxalyl-CoA decarboxylase	27.6	9.3	64.8
MGA_237	LOCUS_02350	sequence1:249701..249982(+)	partial			WP_005816675.1	IS200/IS605-like element ISDha13 family transposase	100.0	61.6	97.8
MGA_256	LOCUS_02540	sequence1:266786..267622(+)	partial			WP_000557907.1	5-methylcytosine-specific endonuclease McrA	38.5	37.9	41.7
MGA_266	LOCUS_02640	sequence1:277984..278652(+)	partial			WP_003594351.1	ABC transporter ATP-binding protein	94.6	74.6	35.1
MGA_268	LOCUS_02660	sequence1:279438..280463(-)	partial			WP_032816634.1	DUF3137 domain-containing protein	54.8	57.9	25.3
MGA_271	LOCUS_02690	sequence1:282105..284201(+)	partial			WP_001042403.1	McrB family protein	61.2	60.8	43.2
MGA_287	LOCUS_02850	sequence1:295949..296461(-)	internal_stop_codon	296492..296494(-)		WP_009896901.1	EFR1 family ferrodoxin	100.0	67.2	55.0
MGA_297	LOCUS_02950	sequence1:304975..305652(+)	partial			WP_010965264.1	alpha/beta hydrolase	71.6	67.4	33.7
MGA_305	LOCUS_03030	sequence1:309984..310220(+)	frameshift		310211	WP_005817484.1	GNAT family N-acetyltransferase	93.6	45.1	47.9
MGA_306	LOCUS_03040	sequence1:310210..310446(+)	frameshift		310211	WP_005817484.1	GNAT family N-acetyltransferase	97.4	46.9	59.2
MGA_308	LOCUS_03060	sequence1:311441..312835(+)	partial			WP_201626387.1	bifunctional peptide-methionine (S)-S-oxide reductase MsrA/peptide-methionine (R)-S-oxide reductase MsrB	66.2	61.8	55.3
MGA_311	LOCUS_03090	sequence1:313909..314049(+)	partial			WP_011861358.1	Maff2 family protein	93.5	60.6	88.4
MGA_314	LOCUS_03120	sequence1:316660..317427(+)	partial			WP_011970686.1	class I SAM-dependent methyltransferase	61.2	57.6	27.6
MGA_326	LOCUS_03240	sequence1:329428..330333(+)	partial			WP_002681336.1	2-dehydropantoate 2-reductase N-terminal domain-containing protein	95.7	54.2	56.9
MGA_329	LOCUS_03270	sequence1:332100..332327(+)	partial			WP_002681642.1	hypothetical protein	100.0	33.8	58.7
MGA_330	LOCUS_03280	sequence1:332293..332565(+)	partial			WP_002681642.1	hypothetical protein	95.6	41.9	52.7
MGA_337	LOCUS_03350	sequence1:335057..335353(+)	frameshift		335290	WP_011836669.1	CPBP family intramembrane metalloprotease	77.6	29.9	52.6
MGA_338	LOCUS_03360	sequence1:335476..336474(+)	partial			WP_014498593.1	PDDEXK nuclease domain-containing protein	99.1	73.8	49.1
MGA_347	LOCUS_03450	sequence1:344137..344496(+)	partial			WP_011458936.1	ATP-binding protein	78.2	23.0	43.6
MGA_353	LOCUS_03510	sequence1:351160..352089(+)	partial			WP_010973908.1	GTP-binding protein	59.5	49.1	35.5
MGA_377	LOCUS_03750	sequence1:375953..378181(+)	partial			WP_003425090.1	methyl-accepting chemotaxis protein	52.3	67.4	38.8
MGA_378	LOCUS_03760	sequence1:378550..378912(-)	partial			WP_011254353.1	DegV family protein	91.7	35.8	30.6
MGA_381	LOCUS_03770	sequence1:385244..386104(+)	partial			WP_011475480.1	Rpn family recombination-promoting nuclease/putative transposase	69.2	80.4	27.1
MGA_383	LOCUS_03790	sequence1:386683..388524(-)	partial			WP_013097689.1	Gfo/Idh/MocA family oxidoreductase	38.2	66.6	25.7
MGA_393	LOCUS_03890	sequence1:399575..400774(-)	partial			WP_000727870.1	phosphorylcholine esterase CbpE	30.3	18.3	33.1
MGA_399	LOCUS_03950	sequence1:407238..407834(+)	partial			WP_116878287.1	HAD family hydrolase	86.9	44.2	55.1
MGA_401	LOCUS_03970	sequence1:408558..410126(-)	partial			WP_010964394.1	hypothetical protein	75.5	13.5	24.0
MGA_408	LOCUS_04040	sequence1:417347..418435(-)	partial			WP_139014079.1	acyltransferase family protein	60.5	68.9	24.4
MGA_425	LOCUS_04210	sequence1:435287..436048(-)	partial			WP_002288207.1	glycosyltransferase family 2 protein	87.0	32.4	39.7
MGA_438	LOCUS_04340	sequence1:450120..450356(-)	partial			WP_005770950.1	tRNA(fMet)-specific endonuclease VapC	61.5	35.1	52.1
MGA_447	LOCUS_04430	sequence1:460155..461711(+)	partial			WP_003244566.1	two-component system response regulator YesN	32.6	47.0	45.1
MGA_449	LOCUS_04450	sequence1:462252..462740(-)	partial			WP_008767220.1	methionine--tRNA ligase	75.9	17.1	40.7
MGA_462	LOCUS_04580	sequence1:471974..472132(+)	partial			WP_011861371.1	relaxase/mobilization nuclease domain-containing protein	100.0	11.7	69.2
MGA_467	LOCUS_04630	sequence1:474150..479528(-)	partial			WP_011860792.1	DEAD/DEAH box helicase family protein	99.7	61.7	79.9
MGA_473	LOCUS_04690	sequence1:484894..485769(-)	partial			WP_011860790.1	DUF4366 domain-containing protein	74.9	42.5	48.2
MGA_489	LOCUS_04850	sequence1:498220..498939(-)	partial			WP_010247013.1	type IV secretory system conjugative DNA transfer family protein	100.0	40.2	89.1
MGA_490	LOCUS_04860	sequence1:499041..499226(-)	partial			WP_201275746.1	transposon-encoded TnpW family protein	100.0	73.8	51.6
MGA_491	LOCUS_04870	sequence1:499315..500430(-)	partial			WP_014498593.1	PDDEXK nuclease domain-containing protein	92.5	71.4	41.4
MGA_492	LOCUS_04880	sequence1:500606..501319(-)	partial			WP_025188680.1	DnaD domain protein	63.3	57.0	48.7
MGA_493	LOCUS_04890	sequence1:501400..503040(-)	partial			WP_011241757.1	MobQ family relaxase	48.0	37.6	38.0
MGA_502	LOCUS_04980	sequence1:511196..512239(-)	partial			WP_010247013.1	type IV secretory system conjugative DNA transfer family protein	94.8	55.4	89.1
MGA_515	LOCUS_05110	sequence1:526043..526738(-)	partial			WP_010963835.1	DNA-binding protein WhiA	81.8	59.6	48.1
MGA_523	LOCUS_05190	sequence1:536176..537765(+)	partial			WP_012048018.1	D-alanyl-D-alanine carboxypeptidase family protein	52.6	64.8	37.9
MGA_528	LOCUS_05240	sequence1:541194..542213(-)	partial			WP_010942455.1	tRNA lysidine(34) synthetase TilS	93.5	67.1	32.5
MGA_537	LOCUS_05330	sequence1:554820..555422(+)	partial			WP_003358306.1	TetR/AcrR family transcriptional regulator	53.5	56.6	28.0
MGA_538	LOCUS_05340	sequence1:555560..556900(-)	partial			WP_164921675.1	DUF5722 domain-containing protein	54.5	33.7	28.7
MGA_558	LOCUS_05540	sequence1:575987..577819(-)	partial			WP_009895801.1	EAL domain-containing protein	70.3	43.8	30.2
MGA_560	LOCUS_05560	sequence1:579811..582669(-)	internal_stop_codon	582706..582708(-)		WP_003425090.1	methyl-accepting chemotaxis protein	40.8	68.8	40.6
MGA_561	LOCUS_05570	sequence1:582706..584937(-)	partial			WP_003425090.1	methyl-accepting chemotaxis protein	49.4	64.4	45.0
MGA_567	LOCUS_05630	sequence1:590016..591143(+)	partial			WP_010965345.1	3D domain-containing protein	37.1	23.8	33.3
MGA_568	LOCUS_05640	sequence1:591376..592032(-)	partial			WP_002865311.1	methyl-accepting chemotaxis protein	45.4	19.1	38.1
MGA_575	LOCUS_05710	sequence1:598095..600125(+)	partial			WP_012048113.1	leucine-rich repeat domain-containing protein	48.1	72.3	22.3
MGA_582	LOCUS_05780	sequence1:606486..606773(+)	frameshift		606770	WP_000229353.1	ABC transporter ATP-binding protein	100.0	20.7	50.5
MGA_583	LOCUS_05790	sequence1:606805..607944(+)	frameshift		606770	WP_000229353.1	ABC transporter ATP-binding protein	95.5	76.9	46.6
MGA_586	LOCUS_05820	sequence1:609600..616268(-)	partial			WP_011068088.1	FctA domain-containing protein	14.2	12.0	27.8
MGA_588	LOCUS_05840	sequence1:622820..623017(-)	partial			WP_005808106.1	ATP-binding protein	86.2	10.4	53.4
MGA_597	LOCUS_05930	sequence1:631527..632948(-)	partial			WP_010965728.1	trypsin-like peptidase domain-containing protein	69.6	73.0	36.2
MGA_601	LOCUS_05970	sequence1:636432..637565(-)	partial			WP_010966511.1	PucR family transcriptional regulator	56.5	64.7	31.8
MGA_604	LOCUS_06000	sequence1:639807..640616(-)	partial			WP_011393691.1	thioesterase	64.7	68.7	28.7
MGA_616	LOCUS_06120	sequence1:653061..655205(-)	partial			WP_003425090.1	methyl-accepting chemotaxis protein	52.2	66.1	38.5
MGA_617	LOCUS_06130	sequence1:655471..656895(-)	partial			WP_010964224.1	alanyl-tRNA editing protein	64.3	67.4	28.4
MGA_639	LOCUS_06350	sequence1:686809..687630(-)	partial			WP_011459386.1	selenium cofactor biosynthesis protein YqeC	62.3	68.8	30.5
MGA_647	LOCUS_06430	sequence1:696258..696866(+)	internal_stop_codon	696228..696230(+),696237..696239(+)		WP_002680420.1	YedE family putative selenium transporter	90.6	52.4	50.3
MGA_656	LOCUS_06520	sequence1:703392..704024(-)	partial			WP_011392619.1	alpha-ribazole phosphatase	81.0	72.9	36.5
MGA_677	LOCUS_06730	sequence1:732778..734961(-)	partial			WP_003692228.1	biosynthetic-type acetolactate synthase large subunit	56.0	58.6	24.3
MGA_683	LOCUS_06790	sequence1:740021..740899(+)	partial			WP_000725079.1	N-acetylmuramoyl-L-alanine amidase family protein	31.8	20.6	37.6
MGA_686	LOCUS_06820	sequence1:742745..743842(+)	partial			WP_012048069.1	hypothetical protein	91.8	70.2	30.6
MGA_690	LOCUS_06860	sequence1:746781..747893(-)	partial			WP_007244100.1	HD-GYP domain-containing protein	62.4	59.2	38.5
MGA_712	LOCUS_07080	sequence1:775255..776307(-)	partial			WP_010989623.1	MBL fold metallo-hydrolase	68.9	57.2	26.0
MGA_713	LOCUS_07090	sequence1:776439..777752(-)	partial			WP_000458116.1	choline-binding protein CbpA	36.8	24.3	40.1
MGA_714	LOCUS_07100	sequence1:777955..779292(-)	partial			WP_001035315.1	pneumococcal surface protein A	22.0	15.8	53.5
MGA_736	LOCUS_07320	sequence1:801427..803208(-)	partial			WP_004454973.1	EAL domain-containing protein	43.2	33.9	42.2
MGA_742	LOCUS_07380	sequence1:810504..811937(-)	partial			WP_106777216.1	DHHW family protein	68.3	57.4	29.6
MGA_743	LOCUS_07390	sequence1:812129..813730(-)	partial			WP_011461245.1	MBOAT family protein	64.4	63.7	36.0
MGA_749	LOCUS_07450	sequence1:820914..822134(-)	partial			WP_001267061.1	peptide chain release factor N(5)-glutamine methyltransferase	73.4	84.5	33.4
MGA_767	LOCUS_07630	sequence1:845795..846214(+)	partial			WP_004190826.1	TOBE domain-containing protein	95.7	48.2	40.4
MGA_778	LOCUS_07740	sequence1:853555..854208(-)	partial			WP_011202285.1	type II toxin-antitoxin system HipA family toxin	95.9	49.8	42.7
MGA_779	LOCUS_07750	sequence1:854208..854528(-)	partial			WP_000516895.1	helix-turn-helix transcriptional regulator	100.0	64.4	38.7
MGA_787	LOCUS_07830	sequence1:861376..861981(-)	partial			WP_102407668.1	KilA-N domain-containing protein	93.5	66.1	49.7
MGA_794	LOCUS_07900	sequence1:869656..869985(-)	partial			WP_004523473.1	ABC transporter permease	86.2	28.3	40.4
MGA_817	LOCUS_08130	sequence1:896872..898629(-)	partial			WP_012048250.1	ABC-F family ATP-binding cassette domain-containing protein	83.4	74.7	45.2
MGA_822	LOCUS_08180	sequence1:900479..901771(-)	partial			WP_000771103.1	choline-binding protein CbpC	33.0	38.8	43.4
MGA_857	LOCUS_08530	sequence1:922894..924006(-)	partial			WP_010966048.1	4Fe-4S binding protein	23.5	22.6	43.7
MGA_864	LOCUS_08600	sequence1:930432..931256(-)	partial			WP_011118265.1	sugar phosphate isomerase/epimerase	75.9	74.4	39.2
MGA_868	LOCUS_08640	sequence1:934497..935507(-)	partial			WP_004083264.1	inositol 2-dehydrogenase	58.3	56.3	33.0
MGA_874	LOCUS_08700	sequence1:943361..944410(-)	partial			WP_000023851.1	HAMP domain-containing sensor histidine kinase	90.8	67.4	44.3
MGA_888	LOCUS_08840	sequence1:960119..961300(-)	partial			WP_002355505.1	acyltransferase family protein	46.3	48.7	33.2
MGA_912	LOCUS_09080	sequence1:989886..990944(-)	partial			WP_004454079.1	putative ABC transporter permease	56.5	68.7	29.1
MGA_927	LOCUS_09230	sequence1:1006431..1006724(-)	partial			WP_003438917.1	DUF6110 family protein	87.6	64.9	45.9
MGA_928	LOCUS_09240	sequence1:1007087..1007287(-)	partial			WP_011241744.1	type II toxin-antitoxin system PemK/MazF family toxin	98.5	57.0	66.2
MGA_932	LOCUS_09280	sequence1:1009252..1011477(-)	partial			WP_011031394.1	CARDB domain-containing protein	64.4	42.5	30.1
MGA_954	LOCUS_09500	sequence1:1033215..1036904(-)	partial			WP_136798312.1	glycosyltransferase	59.0	52.4	36.6
MGA_955	LOCUS_09510	sequence1:1036901..1038358(-)	partial			WP_002289079.1	ABC transporter ATP-binding protein	62.7	74.4	46.9
MGA_959	LOCUS_09550	sequence1:1040666..1041052(-)	partial			WP_000934774.1	single-stranded DNA-binding protein	63.3	56.0	34.6
MGA_965	LOCUS_09610	sequence1:1045432..1046316(-)	partial			WP_003435878.1	DNA polymerase III subunit delta' C-terminal domain-containing protein	68.4	75.2	27.5
MGA_973	LOCUS_09680	sequence1:1057839..1059164(+)	partial			WP_010880882.1	glycerol-3-phosphate cytidylyltransferase	31.7	80.4	52.1
MGA_974	LOCUS_09690	sequence1:1059192..1060082(-)	frameshift,internal_stop_codon	1060311..1060313(-)	1060298,1060199	WP_000489841.1	cell elongation protein CozE	83.4	66.7	30.2
MGA_991	LOCUS_09860	sequence1:1073478..1075508(+)	partial			WP_211478141.1	NEAT domain-containing leucine-rich repeat protein	45.1	33.0	23.9
MGA_992	LOCUS_09870	sequence1:1075666..1076949(-)	partial			WP_002263425.1	trigger factor	67.4	71.4	35.2
MGA_1001	LOCUS_09960	sequence1:1084475..1085020(-)	partial			WP_013390016.1	HD domain-containing protein	65.2	61.0	36.9
MGA_1002	LOCUS_09970	sequence1:1085984..1087243(+)	partial			WP_002680980.1	LTA synthase family protein	83.8	69.3	38.3
MGA_1003	LOCUS_09980	sequence1:1087282..1089048(-)	partial			WP_014207358.1	sensor domain-containing diguanylate cyclase	29.4	34.2	31.6
MGA_1004	LOCUS_09990	sequence1:1089210..1091024(-)	partial			WP_022621368.1	GGDEF domain-containing protein	39.4	71.6	27.6
MGA_1011	LOCUS_10060	sequence1:1100675..1101187(-)	partial			WP_005815159.1	DUF4446 family protein	74.1	74.1	27.8
MGA_1017	LOCUS_10120	sequence1:1107300..1108337(-)	partial			WP_003398827.1	protein jag	42.0	68.8	57.9
MGA_1018	LOCUS_10130	sequence1:1108356..1109672(-)	partial			WP_011393998.1	YidC/Oxa1 family membrane protein insertase	29.9	56.9	39.1
MGA_1023	LOCUS_10180	sequence1:1113312..1115531(-)	partial			WP_003425090.1	methyl-accepting chemotaxis protein	62.8	82.0	37.5
MGA_1035	LOCUS_10300	sequence1:1129360..1131669(+)	partial			WP_010966456.1	ABC transporter substrate-binding protein	28.3	33.7	29.2
MGA_1037	LOCUS_10320	sequence1:1132810..1134489(+)	partial			WP_010963502.1	ABC transporter permease subunit	42.0	78.1	52.8
MGA_1040	LOCUS_10350	sequence1:1137654..1138937(+)	partial			WP_003245023.1	peptidoglycan-N-acetylmuramic acid deacetylase PdaC	44.7	40.5	40.6
MGA_1048	LOCUS_10430	sequence1:1149979..1150626(+)	frameshift,internal_stop_codon	1150696..1150698(+),1150621..1150623(+)	1150614	WP_002681035.1	KHG/KDPG aldolase/sugar kinase fusion protein	98.6	35.8	45.3
MGA_1049	LOCUS_10440	sequence1:1150710..1151732(+)	frameshift,internal_stop_codon	1150696..1150698(+),1150621..1150623(+)	1150614	WP_002681035.1	KHG/KDPG aldolase/sugar kinase fusion protein	99.4	57.3	61.5
MGA_1057	LOCUS_10520	sequence1:1161432..1163648(-)	partial			WP_003425090.1	methyl-accepting chemotaxis protein	52.4	67.4	38.0
MGA_1068	LOCUS_10630	sequence1:1172785..1174092(-)	partial			WP_011037351.1	sugar ABC transporter substrate-binding protein	71.7	68.5	26.0
MGA_1078	LOCUS_10730	sequence1:1184778..1186517(+)	partial			WP_012868996.1	glycosyl hydrolase family 18 protein	49.2	59.7	32.9
MGA_1085	LOCUS_10800	sequence1:1194061..1195323(+)	partial			WP_010969142.1	exonuclease SbcCD subunit D	66.9	54.7	25.2
MGA_1090	LOCUS_10850	sequence1:1201228..1202043(+)	partial			WP_011143514.1	NAD(+) kinase	80.1	70.6	39.7
MGA_1094	LOCUS_10890	sequence1:1205997..1206845(+)	partial			WP_000823432.1	peptidylprolyl isomerase	47.2	50.4	30.4
MGA_1117	LOCUS_11120	sequence1:1229338..1231860(-)	partial			WP_211477941.1	SpaA isopeptide-forming pilin-related protein	16.3	9.3	36.2
MGA_1118	LOCUS_11130	sequence1:1232324..1234885(-)	partial			WP_011837563.1	Cna B-type domain-containing protein	25.1	13.9	30.2
MGA_1158	LOCUS_11530	sequence1:1288207..1290036(-)	partial			WP_011392267.1	flagellar hook-associated protein FlgK	38.3	46.3	31.2
MGA_1162	LOCUS_11570	sequence1:1292599..1293006(+)	partial			WP_012870093.1	EscU/YscU/HrcU family type III secretion system export apparatus switch protein	57.0	78.6	44.2
MGA_1163	LOCUS_11580	sequence1:1293046..1294440(+)	partial			WP_000753855.1	choline-binding protein PcpA	40.7	25.2	42.3
MGA_1164	LOCUS_11590	sequence1:1294600..1295904(+)	partial			WP_001035315.1	pneumococcal surface protein A	48.4	33.8	31.5
MGA_1165	LOCUS_11600	sequence1:1296206..1297114(+)	partial			WP_004398858.1	transglycosylase CwlP	55.3	7.0	46.4
MGA_1167	LOCUS_11620	sequence1:1297870..1298085(+)	partial			WP_011987020.1	glycosyltransferase family 2 protein	97.2	10.9	43.8
MGA_1168	LOCUS_11630	sequence1:1298121..1300094(+)	partial			WP_015263274.1	hypothetical protein	42.3	29.8	25.7
MGA_1169	LOCUS_11640	sequence1:1300167..1302182(+)	partial			WP_015263274.1	hypothetical protein	41.4	28.1	29.2
MGA_1170	LOCUS_11650	sequence1:1302255..1304189(+)	partial			WP_015263274.1	hypothetical protein	43.2	30.3	27.1
MGA_1171	LOCUS_11660	sequence1:1304249..1306237(+)	partial			WP_015263274.1	hypothetical protein	42.1	28.2	31.6
MGA_1173	LOCUS_11680	sequence1:1306511..1308505(+)	partial			WP_015263274.1	hypothetical protein	42.2	30.0	28.6
MGA_1174	LOCUS_11690	sequence1:1308576..1310558(+)	partial			WP_015263274.1	hypothetical protein	44.7	30.5	27.1
MGA_1175	LOCUS_11700	sequence1:1310657..1312597(+)	partial			WP_015263274.1	hypothetical protein	39.8	27.3	30.7
MGA_1176	LOCUS_11710	sequence1:1312747..1313922(+)	partial			WP_011202931.1	phosphonoacetaldehyde reductase	65.5	68.5	31.9
MGA_1178	LOCUS_11730	sequence1:1314704..1315138(+)	partial			WP_011027196.1	CAP domain-containing protein	80.6	42.1	39.0
MGA_1182	LOCUS_11770	sequence1:1317025..1319181(+)	partial			WP_004454973.1	EAL domain-containing protein	51.8	50.6	35.2
MGA_1190	LOCUS_11850	sequence1:1326426..1326959(+)	partial			WP_011392298.1	flagellar hook capping FlgD N-terminal domain-containing protein	70.1	74.3	32.3
MGA_1198	LOCUS_11930	sequence1:1332788..1334416(+)	partial			WP_010965513.1	flagellar motor switch phosphatase FliY	50.0	67.3	30.7
MGA_1200	LOCUS_11950	sequence1:1334841..1335497(+)	partial			WP_081361032.1	flagellar type III secretion system pore protein FliP	94.0	64.7	55.1
MGA_1203	LOCUS_11980	sequence1:1336633..1337718(+)	frameshift,internal_stop_codon	1336612..1336614(+)	1336824,1336881	WP_011860706.1	fused FliR family export protein/FlhB family type III secretion system protein	97.0	58.4	35.4
MGA_1211	LOCUS_12060	sequence1:1344870..1345925(+)	partial			WP_000757725.1	endo-beta-N-acetylglucosaminidase	31.6	17.5	30.7
MGA_1234	LOCUS_12290	sequence1:1372412..1373092(+)	frameshift		1373077	WP_012869315.1	ABC transporter permease	98.2	68.9	47.7
MGA_1235	LOCUS_12300	sequence1:1373098..1373358(+)	frameshift		1373077	WP_012869315.1	ABC transporter permease	93.0	24.8	53.8
MGA_1247	LOCUS_12420	sequence1:1387502..1388605(-)	partial			WP_002295798.1	peptidylprolyl isomerase	50.4	73.1	43.3
MGA_1253	LOCUS_12480	sequence1:1394383..1395708(+)	partial			WP_011836867.1	phosphatidylserine decarboxylase	45.1	57.2	36.1
MGA_1255	LOCUS_12500	sequence1:1396841..1398310(+)	partial			WP_008759897.1	Fic family protein	53.8	73.9	47.0
MGA_1258	LOCUS_12530	sequence1:1400875..1401609(+)	partial			WP_000725079.1	N-acetylmuramoyl-L-alanine amidase family protein	28.3	12.8	46.4
MGA_1260	LOCUS_12550	sequence1:1404208..1406277(+)	partial			WP_011016607.1	TIR domain-containing protein	98.0	69.1	31.6
MGA_1264	LOCUS_12590	sequence1:1409689..1410696(-)	partial			WP_011203662.1	type II CAAX endopeptidase family protein	60.9	73.7	26.7
MGA_1265	LOCUS_12600	sequence1:1411036..1411773(+)	partial			WP_000725079.1	N-acetylmuramoyl-L-alanine amidase family protein	34.7	16.1	34.1
MGA_1269	LOCUS_12630	sequence1:1424708..1424938(+)	partial			WP_000146974.1	type I restriction-modification system subunit M	72.4	10.5	69.1
MGA_1289	LOCUS_12830	sequence1:1450419..1451126(+)	partial			WP_012583465.1	helix-hairpin-helix domain-containing protein	42.6	52.4	47.0
MGA_1290	LOCUS_12840	sequence1:1451370..1452569(+)	partial			WP_011459514.1	D-alanyl-D-alanine carboxypeptidase	67.2	83.6	32.7
MGA_1301	LOCUS_12950	sequence1:1463525..1463887(-)	partial			WP_010906130.1	DNA internalization-related competence protein ComEC/Rec2	85.0	13.3	40.2
MGA_1311	LOCUS_13050	sequence1:1475415..1475942(+)	partial			WP_011947942.1	3D domain-containing protein	32.0	16.5	55.2
MGA_1312	LOCUS_13060	sequence1:1476172..1478535(+)	partial			WP_003425090.1	methyl-accepting chemotaxis protein	46.9	65.8	40.3
MGA_1316	LOCUS_13100	sequence1:1481357..1482850(+)	partial			WP_011459501.1	HAMP domain-containing sensor histidine kinase	66.6	61.6	37.6
MGA_1324	LOCUS_13180	sequence1:1489411..1490988(+)	partial			WP_010887814.1	MoxR family ATPase	38.3	55.0	26.9
MGA_1326	LOCUS_13200	sequence1:1491899..1494391(-)	partial			WP_011837563.1	Cna B-type domain-containing protein	48.8	29.3	25.1
MGA_1341	LOCUS_13350	sequence1:1505957..1506679(+)	partial			WP_162891890.1	23S rRNA pseudouridine(2604) synthase RluF	98.3	67.1	44.9
MGA_1344	LOCUS_13380	sequence1:1510027..1512246(-)	partial			WP_003425090.1	methyl-accepting chemotaxis protein	52.4	67.4	43.7
MGA_1349	LOCUS_13430	sequence1:1515349..1516971(+)	partial			WP_003592858.1	cell wall hydrolase P75	30.9	33.9	32.2
MGA_1355	LOCUS_13490	sequence1:1523612..1525021(+)	partial			WP_010966495.1	HAMP domain-containing sensor histidine kinase	66.3	65.7	38.1
MGA_1356	LOCUS_13500	sequence1:1525025..1526248(+)	partial			WP_012545685.1	DegQ family serine endoprotease	63.4	53.4	23.6
MGA_1373	LOCUS_13670	sequence1:1545901..1546164(+)	partial			WP_002287519.1	nucleotidyl transferase AbiEii/AbiGii toxin family protein	60.9	17.7	50.9
MGA_1376	LOCUS_13700	sequence1:1547972..1549609(+)	partial			WP_181146406.1	N-acetylmuramoyl-L-alanine amidase family protein	22.4	33.6	37.1
MGA_1395	LOCUS_13890	sequence1:1570415..1571665(+)	partial			WP_000860178.1	type I 3-dehydroquinate dehydratase	47.1	80.6	35.9
MGA_1397	LOCUS_13910	sequence1:1572952..1573731(+)	partial			WP_010964798.1	phosphatase PAP2 family protein	65.6	74.4	31.2
MGA_1430	LOCUS_14240	sequence1:1610252..1610533(+)	partial			WP_005902609.1	ATP synthase F0 subunit C	62.4	65.2	53.4
MGA_1455	LOCUS_14470	sequence1:1635962..1636666(+)	partial			WP_002681526.1	gamma-glutamyl-gamma-aminobutyrate hydrolase family protein	74.8	65.6	25.7
MGA_1465	LOCUS_14570	sequence1:1646788..1647759(-)	partial			WP_011836909.1	CPBP family intramembrane metalloprotease	53.9	53.8	25.8
MGA_1483	LOCUS_14750	sequence1:1668949..1671180(+)	partial			WP_003425090.1	methyl-accepting chemotaxis protein	47.5	62.1	40.1
MGA_1485	LOCUS_14770	sequence1:1673364..1674836(+)	partial			WP_011986984.1	LCP family protein	46.3	70.9	34.3
MGA_1487	LOCUS_14790	sequence1:1676037..1676849(+)	partial			WP_000753855.1	choline-binding protein PcpA	35.2	13.9	37.0
MGA_1496	LOCUS_14880	sequence1:1688600..1689079(+)	partial			WP_010964147.1	VanZ family protein	73.6	38.3	37.8
MGA_1499	LOCUS_14910	sequence1:1690323..1691810(+)	partial			WP_012048018.1	D-alanyl-D-alanine carboxypeptidase family protein	56.4	65.3	33.7
MGA_1548	LOCUS_15400	sequence1:1750053..1751159(+)	partial			WP_004440854.1	AI-2E family transporter	50.0	53.8	26.1
MGA_1555	LOCUS_15470	sequence1:1758286..1760043(+)	partial			WP_000524006.1	glucosaminidase domain-containing protein	20.9	17.6	38.5
MGA_1566	LOCUS_15580	sequence1:1777813..1779792(+)	partial			WP_000666732.1	primosomal protein N'	76.8	63.2	45.7
MGA_1572	LOCUS_15640	sequence1:1784671..1786683(+)	partial			WP_087065956.1	Stk1 family PASTA domain-containing Ser/Thr kinase	41.2	40.0	44.8
MGA_1583	LOCUS_15750	sequence1:1798845..1799951(+)	frameshift		1798843	WP_005811135.1	bifunctional 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/30S ribosomal protein S1	91.0	50.8	40.9
MGA_1589	LOCUS_15810	sequence1:1805385..1806524(+)	partial			WP_219718821.1	hypothetical protein	59.6	43.2	33.3
MGA_1634	LOCUS_16260	sequence1:1859292..1860569(+)	partial			WP_124797038.1	putative glycoside hydrolase	76.5	70.0	35.5
MGA_1645	LOCUS_16360	sequence1:1873088..1874836(+)	partial			WP_003231400.1	VanW family protein	26.8	54.8	42.2
MGA_1657	LOCUS_16480	sequence1:1890788..1893256(-)	partial			WP_011837563.1	Cna B-type domain-containing protein	22.0	12.1	29.4
MGA_1658	LOCUS_16490	sequence1:1893650..1894159(+)	partial			WP_011038290.1	isoprenylcysteine carboxylmethyltransferase family protein	46.2	46.4	42.3
MGA_1673	LOCUS_16640	sequence1:1912180..1915050(+)	partial			WP_010942721.1	penicillin-binding protein 2	33.4	52.4	31.6
MGA_1676	LOCUS_16670	sequence1:1916721..1917596(+)	partial			WP_001252638.1	D-alanyl-D-alanine carboxypeptidase DacB	82.8	59.6	36.8
MGA_1697	LOCUS_16880	sequence1:1936872..1937432(-)	partial			WP_000155598.1	Holliday junction resolvase RecU	75.8	72.5	40.0
MGA_1732	LOCUS_17230	sequence1:1975284..1976555(-)	partial			WP_013096963.1	flagellin lysine-N-methylase	42.6	46.4	29.0
MGA_1737	LOCUS_17280	sequence1:1980604..1981512(-)	partial			WP_010942917.1	NlpC/P60 family protein	42.4	49.4	35.6
MGA_1741	LOCUS_17320	sequence1:1984402..1985748(-)	partial			WP_012048446.1	aminotransferase class V-fold PLP-dependent enzyme	61.8	72.1	46.0
MGA_1751	LOCUS_17420	sequence1:1998995..2000317(-)	partial			WP_012048131.1	U32 family peptidase	76.8	42.4	45.9
MGA_1759	LOCUS_17500	sequence1:2006675..2007889(+)	partial			WP_014518885.1	ribonuclease H-like domain-containing protein	50.0	73.6	32.7
MGA_1774	LOCUS_17650	sequence1:2021859..2022251(+)	partial			WP_000753855.1	choline-binding protein PcpA	65.4	11.0	37.6
MGA_1780	LOCUS_17710	sequence1:2027187..2028350(-)	partial			WP_011948973.1	M14 family metallopeptidase	75.7	68.1	33.8
MGA_1783	LOCUS_17740	sequence1:2029888..2030406(+)	partial			WP_012869204.1	folate family ECF transporter S component	48.8	48.4	31.5
MGA_1788	LOCUS_17790	sequence1:2033359..2035788(-)	partial			WP_010964394.1	hypothetical protein	16.8	5.0	35.2
MGA_1796	LOCUS_17870	sequence1:2042072..2042323(-)	partial			WP_011393740.1	acetolactate synthase small subunit	86.7	41.9	48.6
MGA_1798	LOCUS_17890	sequence1:2044302..2044898(-)	partial			WP_015944116.1	ATP-binding cassette domain-containing protein	75.8	73.7	41.3
MGA_1811	LOCUS_18020	sequence1:2055693..2056892(-)	partial			WP_012545033.1	adenylosuccinate synthase	78.9	69.9	26.2
MGA_1820	LOCUS_18110	sequence1:2063656..2064015(-)	partial			WP_045599895.1	type II toxin-antitoxin system RelE/ParE family toxin	63.9	69.1	40.8
MGA_1823	LOCUS_18140	sequence1:2068872..2069075(-)	partial			WP_011861368.1	single-strand DNA-binding protein	100.0	30.6	86.6
MGA_1836	LOCUS_18270	sequence1:2089149..2089907(+)	frameshift,internal_stop_codon	2089095..2089097(+)	2089103	WP_010680900.1	IS110 family transposase	93.7	60.4	45.8
MGA_1856	LOCUS_18470	sequence1:2115125..2116084(-)	partial			WP_002387401.1	RsiV family protein	53.0	58.5	28.9
MGA_1861	LOCUS_18520	sequence1:2122962..2126669(-)	partial			WP_011948191.1	helicase-exonuclease AddAB subunit AddB	52.9	57.7	29.8
MGA_1862	LOCUS_18530	sequence1:2126762..2127814(-)	partial			WP_005809146.1	nucleoside hydrolase	71.4	84.3	38.5
MGA_1863	LOCUS_18540	sequence1:2127817..2128989(-)	partial			WP_004081574.1	ABC transporter ATP-binding protein	61.8	65.5	47.3
MGA_1864	LOCUS_18550	sequence1:2128983..2129321(-)	partial			WP_011948770.1	ABC transporter permease subunit	92.9	38.8	33.7
MGA_1874	LOCUS_18650	sequence1:2138836..2139966(-)	partial			WP_011948793.1	sulfurtransferase	78.7	65.9	39.4
MGA_1880	LOCUS_18710	sequence1:2143293..2144351(-)	partial			WP_002681871.1	Fe-S cluster assembly protein SufD	71.0	67.7	26.2
MGA_1896	LOCUS_18870	sequence1:2162530..2163273(-)	partial			WP_010964614.1	tRNA (adenine(22)-N(1))-methyltransferase TrmK	59.1	65.5	36.7
MGA_1924	LOCUS_19150	sequence1:2186705..2188216(-)	partial			WP_010865220.1	NAD(P)H-hydrate dehydratase	64.6	55.3	30.7
MGA_1932	LOCUS_19230	sequence1:2196963..2199863(-)	partial			WP_011022007.1	PAS domain-containing protein	56.3	53.9	30.7
MGA_1938	LOCUS_19290	sequence1:2205879..2206538(+)	partial			WP_002286213.1	AAA family ATPase	51.6	10.8	34.8
MGA_1939	LOCUS_19300	sequence1:2206597..2207862(+)	partial			WP_011392017.1	AAA family ATPase	36.1	12.4	28.9
MGA_1940	LOCUS_19310	sequence1:2207967..2209259(-)	partial			WP_002296511.1	AraC family transcriptional regulator	46.3	69.5	26.5
MGA_1947	LOCUS_19380	sequence1:2217060..2218712(-)	partial			WP_009903185.1	C40 family peptidase	41.6	56.8	31.7
MGA_1964	LOCUS_19550	sequence1:2232917..2234767(-)	partial			WP_005817438.1	histidine kinase	34.9	46.2	33.0
MGA_1973	LOCUS_19640	sequence1:2241955..2242341(-)	partial			WP_002681714.1	ankyrin repeat domain-containing protein	94.5	34.2	60.3
MGA_1977	LOCUS_19680	sequence1:2245406..2245621(-)	partial			WP_041272711.1	group II intron reverse transcriptase/maturase	95.8	14.4	39.7
MGA_1981	LOCUS_19720	sequence1:2249204..2249650(-)	partial			WP_041272711.1	group II intron reverse transcriptase/maturase	92.6	29.1	35.0
MGA_1983	LOCUS_19740	sequence1:2249786..2250139(-)	partial			WP_002681887.1	hypothetical protein	100.0	44.2	52.8
MGA_1999	LOCUS_19900	sequence1:2262481..2264277(-)	partial			WP_000753855.1	choline-binding protein PcpA	23.9	21.0	37.3
MGA_2003	LOCUS_19940	sequence1:2268533..2269561(-)	partial			WP_015942544.1	TIGR03943 family protein	33.9	40.1	32.2
MGA_2004	LOCUS_19950	sequence1:2269573..2270823(-)	partial			WP_005815048.1	GTP-binding protein	46.2	55.4	47.4
MGA_2024	LOCUS_20150	sequence1:2292236..2293351(-)	partial			WP_001035315.1	pneumococcal surface protein A	65.8	34.4	39.8
MGA_2033	LOCUS_20240	sequence1:2306122..2307396(-)	partial			WP_011948340.1	HAMP domain-containing sensor histidine kinase	70.8	80.4	39.0
MGA_2045	LOCUS_20360	sequence1:2318577..2320109(+)	partial			WP_011947904.1	L,D-transpeptidase	33.3	61.6	28.2
MGA_2050	LOCUS_20410	sequence1:2324845..2325720(-)	partial			WP_010965609.1	glycosyltransferase family 2 protein	78.4	72.6	27.9
MGA_2058	LOCUS_20490	sequence1:2334749..2336398(-)	partial			WP_000377275.1	diguanylate cyclase	37.5	57.9	35.7
MGA_2059	LOCUS_20500	sequence1:2336425..2337822(-)	partial			WP_003245023.1	peptidoglycan-N-acetylmuramic acid deacetylase PdaC	41.3	40.9	35.9
MGA_2062	LOCUS_20530	sequence1:2340270..2342612(-)	partial			WP_011837563.1	Cna B-type domain-containing protein	16.9	8.3	35.3
MGA_2063	LOCUS_20540	sequence1:2342930..2345095(-)	partial			WP_004190216.1	Cna B-type domain-containing protein	52.6	51.9	25.6
MGA_2065	LOCUS_20560	sequence1:2346491..2347669(-)	partial			WP_000753855.1	choline-binding protein PcpA	27.0	13.9	40.6
MGA_2066	LOCUS_20570	sequence1:2348062..2349003(+)	partial			WP_201626387.1	bifunctional peptide-methionine (S)-S-oxide reductase MsrA/peptide-methionine (R)-S-oxide reductase MsrB	99.4	61.6	61.7
MGA_2069	LOCUS_20600	sequence1:2350555..2352789(-)	partial			WP_003425090.1	methyl-accepting chemotaxis protein	51.7	67.7	40.1
MGA_2070	LOCUS_20610	sequence1:2353194..2355395(+)	partial			WP_003425090.1	methyl-accepting chemotaxis protein	58.7	75.0	38.5
MGA_2079	LOCUS_20700	sequence1:2360677..2362056(-)	partial			WP_010889604.1	erythromycin esterase family protein	23.1	27.9	29.9
MGA_2084	LOCUS_20750	sequence1:2366970..2367800(-)	partial			WP_011861372.1	4Fe-4S binding protein	27.5	24.3	43.4
MGA_2088	LOCUS_20790	sequence1:2369139..2369417(-)	partial			WP_011948303.1	HD domain-containing protein	96.7	42.1	42.9
MGA_2092	LOCUS_20830	sequence1:2372603..2372875(-)	partial			WP_011948303.1	HD domain-containing protein	92.2	39.3	42.4
MGA_2103	LOCUS_20940	sequence1:2382931..2384607(-)	partial			WP_003243833.1	two-component system sensor histidine kinase YesM	56.3	54.8	34.3
MGA_2114	LOCUS_21050	sequence1:2394721..2397171(-)	partial			WP_011837269.1	SpaA isopeptide-forming pilin-related protein	51.8	25.8	28.2
MGA_2115	LOCUS_21060	sequence1:2397519..2400029(-)	partial			WP_011459570.1	ABC transporter substrate binding protein	49.3	42.3	38.1
MGA_2124	LOCUS_21150	sequence1:2411836..2414526(-)	partial			WP_011460393.1	translation initiation factor IF-2	81.4	72.2	50.0
MGA_2127	LOCUS_21180	sequence1:2415119..2416285(-)	partial			WP_011460395.1	transcription termination factor NusA	90.2	71.0	52.9
MGA_2151	LOCUS_21420	sequence2:1..1860(+)	partial			WP_011674157.1	type IV secretory system conjugative DNA transfer family protein	71.4	49.3	26.0
MGA_2157	LOCUS_21480	sequence2:4516..6399(+)	partial			WP_011166393.1	DUF853 family protein	92.2	72.4	25.6
MGA_2158	LOCUS_21490	sequence2:6399..8117(+)	partial			WP_033261831.1	M15 family metallopeptidase	13.5	36.1	36.1
MGA_2168	LOCUS_21590	sequence2:18109..19545(+)	partial			WP_011458828.1	MobP3 family relaxase	68.8	33.1	26.5
MGA_2169	LOCUS_21600	sequence2:19849..20226(+)	partial			WP_003114685.1	single-stranded DNA-binding protein	80.0	60.6	36.5
