{ "type": "genome", "identifier": "GCF_000238335.3", "organism": "Pseudoalteromonas marina", "title": "Pseudoalteromonas marina", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Shandong University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000238335.3", "bioproject": "PRJNA224116", "biosample": "SAMN03380241", "wgs_master": "AHCB00000000.3", "refseq_category": "na", "taxid": "267375", "species_taxid": "267375", "organism_name": "Pseudoalteromonas marina", "infraspecific_name": "strain=DSM 17587", "isolate": "na", "version_status": "latest", "assembly_level": "Chromosome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/10/02", "asm_name": "ASM23833v4", "asm_submitter": "Shandong University", "gbrs_paired_asm": "GCA_000238335.4", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/238/335/GCF_000238335.3_ASM23833v4", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4190548", "genome_size_ungapped": "4190548", "gc_percent": "39.500000", "replicon_count": "1", "scaffold_count": "12", "contig_count": "12", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000238335.3-RS_2024_04_06", "annotation_date": "2024-04-06", "total_gene_count": "3824", "protein_coding_gene_count": "3688", "non_coding_gene_count": "119", "pubmed_id": "22535931" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-10-02", "dateModified": "2020-10-02", "datePublished": "2020-10-02", "_annotation": { "sample_count": 1, "sample_organism": [ "Pseudoalteromonas marina" ], "sample_taxid": [ "267375" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea" ], "sample_host_location_id": [], "data_size": "1.184 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4190548", "Number of Sequences": "12", "Longest Sequences (bp)": "1931316", "N50 (bp)": "728006", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "39.7", "Number of CDSs": "3744", "Average Protein Length": "330.9", "Coding Ratio (%)": "88.7", "Number of rRNAs": "6", "Number of tRNAs": "102", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Pseudoalteromonas marina", "strain": "strain=DSM 17587", "accession": "GCA_000238335.4", "taxid": 267375, "species_taxid": 267375, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1391, "total_fragments": 1391, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Pseudoalteromonas carrageenovora", "strain": "strain=ATCC 43555", "accession": "GCA_900239935.1", "taxid": 227, "species_taxid": 227, "relation_to_type": "type", "validated": true, "ani": 84.3563, "matched_fragments": 975, "total_fragments": 1391, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoalteromonas carrageenovora", "strain": "strain=IAM 12662", "accession": "GCA_014925295.1", "taxid": 227, "species_taxid": 227, "relation_to_type": "type", "validated": true, "ani": 84.2544, "matched_fragments": 973, "total_fragments": 1391, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoalteromonas carrageenovora", "strain": "strain=NBRC 12985", "accession": "GCA_006539245.1", "taxid": 227, "species_taxid": 227, "relation_to_type": "type", "validated": true, "ani": 84.1831, "matched_fragments": 944, "total_fragments": 1391, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoalteromonas espejiana", "strain": "strain=NBRC 102222", "accession": "GCA_007989585.1", "taxid": 28107, "species_taxid": 28107, "relation_to_type": "type", "validated": true, "ani": 83.2973, "matched_fragments": 899, "total_fragments": 1391, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoalteromonas distincta", "strain": "strain=ATCC 700518", "accession": "GCA_000814675.1", "taxid": 77608, "species_taxid": 77608, "relation_to_type": "type", "validated": true, "ani": 83.0971, "matched_fragments": 967, "total_fragments": 1391, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoalteromonas fuliginea", "strain": "strain=KMM 216", "accession": "GCA_000690055.1", "taxid": 1872678, "species_taxid": 1872678, "relation_to_type": "type", "validated": true, "ani": 82.6479, "matched_fragments": 917, "total_fragments": 1391, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoalteromonas issachenkonii", "strain": "strain=KMM 3549", "accession": "GCA_002310795.1", "taxid": 152297, "species_taxid": 152297, "relation_to_type": "suspected-type", "validated": true, "ani": 81.769, "matched_fragments": 760, "total_fragments": 1391, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoalteromonas tetraodonis", "strain": "strain=GFC", "accession": "GCA_002310835.1", "taxid": 43659, "species_taxid": 43659, "relation_to_type": "suspected-type", "validated": true, "ani": 81.7135, "matched_fragments": 772, "total_fragments": 1391, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoalteromonas tetraodonis", "strain": "strain=NBRC 103034", "accession": "GCA_007991235.1", "taxid": 43659, "species_taxid": 43659, "relation_to_type": "suspected-type", "validated": true, "ani": 81.6573, "matched_fragments": 735, "total_fragments": 1391, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoalteromonas undina", "strain": "strain=DSM 6065", "accession": "GCA_000238275.4", "taxid": 43660, "species_taxid": 43660, "relation_to_type": "type", "validated": true, "ani": 81.6406, "matched_fragments": 741, "total_fragments": 1391, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aliivibrio fischeri", "strain": "strain=DSM 507", "accession": "GCA_023983475.1", "taxid": 668, "species_taxid": 668, "relation_to_type": "suspected-type", "validated": true, "ani": 78.5051, "matched_fragments": 60, "total_fragments": 1391, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Photobacterium phosphoreum", "strain": "strain=ATCC 11040", "accession": "GCA_000949955.1", "taxid": 659, "species_taxid": 659, "relation_to_type": "type", "validated": true, "ani": 76.4021, "matched_fragments": 59, "total_fragments": 1391, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shewanella basaltis", "strain": "strain=KCTC 22121", "accession": "GCA_023283885.1", "taxid": 472183, "species_taxid": 472183, "relation_to_type": "type", "validated": true, "ani": 76.1649, "matched_fragments": 75, "total_fragments": 1391, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000238335.3", "gtdb_species": "s__Pseudoalteromonas marina", "ani": 100.0, "matched_fragments": 1391, "total_fragments": 1391, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Pseudoalteromonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.76", "min_intra_species_ani": "97.57", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.88", "num_clustered_genomes": 12, "status": "conclusive" }, { "accession": "GCF_001468485.1", "gtdb_species": "s__Pseudoalteromonas sp001468485", "ani": 91.4829, "matched_fragments": 1219, "total_fragments": 1391, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Pseudoalteromonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.31", "min_intra_species_ani": "96.95", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.92", "num_clustered_genomes": 8, "status": "-" }, { "accession": "GCF_900239935.1", "gtdb_species": "s__Pseudoalteromonas carrageenovora", "ani": 84.3576, "matched_fragments": 974, "total_fragments": 1391, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Pseudoalteromonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.00", "min_intra_species_ani": "96.44", "mean_intra_species_af": "0.97", "min_intra_species_af": "0.91", "num_clustered_genomes": 6, "status": "-" }, { "accession": "GCF_018100985.1", "gtdb_species": "s__Pseudoalteromonas sp018100985", "ani": 83.5664, "matched_fragments": 879, "total_fragments": 1391, 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1391, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Pseudoalteromonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.73", "min_intra_species_ani": "97.18", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.86", "num_clustered_genomes": 5, "status": "-" }, { "accession": "GCF_008370255.1", "gtdb_species": "s__Pseudoalteromonas sp008370255", "ani": 82.7565, "matched_fragments": 934, "total_fragments": 1391, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Pseudoalteromonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000238395.3", "gtdb_species": "s__Pseudoalteromonas arctica", "ani": 82.6623, "matched_fragments": 939, "total_fragments": 1391, 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20.5, "optimum_ph": 7.05, "genome_size": 3807836.5, "gc_content": 39.9, "coding_genes": 3045.0, "rRNA16S_genes": 8.705, "tRNA_genes": 102.0, "gram_stain": 0.0, "sporulation": 0.0, "motility": 1.0, "range_salinity": 0.8, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Pseudoalteromonas", "marina" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }