{ "type": "genome", "identifier": "GCF_000238375.3", "organism": "Pseudoalteromonas citrea", "title": "Pseudoalteromonas citrea", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Shandong University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000238375.3", "bioproject": "PRJNA224116", "biosample": "SAMN03380236", "wgs_master": "AHBZ00000000.3", "refseq_category": "reference genome", "taxid": "43655", "species_taxid": "43655", "organism_name": "Pseudoalteromonas citrea", "infraspecific_name": "strain=DSM 8771", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/10/02", "asm_name": "ASM23837v4", "asm_submitter": "Shandong University", "gbrs_paired_asm": "GCA_000238375.4", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/238/375/GCF_000238375.3_ASM23837v4", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5434598", "genome_size_ungapped": "5434598", "gc_percent": "41.000000", "replicon_count": "0", "scaffold_count": "27", "contig_count": "27", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000238375.3-RS_2024_03_23", "annotation_date": "2024-03-23", "total_gene_count": "4620", "protein_coding_gene_count": "4448", "non_coding_gene_count": "115", "pubmed_id": "22535931" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-10-02", "dateModified": "2020-10-02", "datePublished": "2020-10-02", "_annotation": { "sample_count": 1, "sample_organism": [ "Pseudoalteromonas citrea" ], "sample_taxid": [ "43655" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "France: Nice" ], "sample_host_location_id": [], "data_size": "1.537 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5434598", "Number of Sequences": "27", "Longest Sequences (bp)": "1164454", "N50 (bp)": "732536", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "41.2", "Number of CDSs": "4537", "Average Protein Length": "349.2", "Coding Ratio (%)": "87.5", "Number of rRNAs": "10", "Number of tRNAs": "100", "Number of CRISPRs": "4" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Pseudoalteromonas citrea", "strain": "strain=DSM 8771", "accession": "GCA_000238375.4", "taxid": 43655, "species_taxid": 43655, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1801, "total_fragments": 1802, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Pseudoalteromonas aurantia", "strain": "strain=208", "accession": "GCA_014858725.1", "taxid": 43654, "species_taxid": 43654, "relation_to_type": "type", "validated": true, "ani": 82.7981, "matched_fragments": 901, "total_fragments": 1802, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoalteromonas amylolytica", "strain": "strain=JW1", "accession": "GCA_001854605.1", "taxid": 1859457, "species_taxid": 1859457, "relation_to_type": "type", "validated": true, "ani": 79.5825, "matched_fragments": 387, "total_fragments": 1802, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoalteromonas caenipelagi", "strain": "strain=JBTF-M23", "accession": "GCA_013140855.1", "taxid": 2726988, "species_taxid": 2726988, "relation_to_type": "type", "validated": true, "ani": 79.4305, "matched_fragments": 380, "total_fragments": 1802, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoalteromonas byunsanensis", "strain": "strain=JCM 12483", "accession": "GCA_001854475.1", "taxid": 327939, "species_taxid": 327939, "relation_to_type": "type", "validated": true, "ani": 79.3968, "matched_fragments": 383, "total_fragments": 1802, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoalteromonas galatheae", "strain": "strain=S4498", "accession": "GCA_005886105.2", "taxid": 579562, "species_taxid": 579562, "relation_to_type": "type", "validated": true, "ani": 79.1965, "matched_fragments": 283, "total_fragments": 1802, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoalteromonas phenolica", "strain": "strain=KCTC 12086", "accession": "GCA_001444405.1", "taxid": 161398, "species_taxid": 161398, "relation_to_type": "suspected-type", "validated": true, "ani": 79.1155, "matched_fragments": 336, "total_fragments": 1802, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoalteromonas phenolica", "strain": "strain=O-BC30", "accession": "GCA_014925335.1", "taxid": 161398, "species_taxid": 161398, "relation_to_type": "suspected-type", "validated": true, "ani": 79.1046, "matched_fragments": 331, "total_fragments": 1802, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoalteromonas tetraodonis", "strain": "strain=GFC", "accession": "GCA_002310835.1", "taxid": 43659, "species_taxid": 43659, "relation_to_type": "suspected-type", "validated": true, "ani": 79.0341, "matched_fragments": 242, "total_fragments": 1802, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoalteromonas lipolytica", "strain": "strain=CGMCC 1.8499", "accession": "GCA_900116435.1", "taxid": 570156, "species_taxid": 570156, "relation_to_type": "suspected-type", "validated": true, "ani": 78.8165, "matched_fragments": 245, "total_fragments": 1802, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoalteromonas lipolytica", "strain": "strain=LMEB 39", "accession": "GCA_014925285.1", "taxid": 570156, "species_taxid": 570156, "relation_to_type": "suspected-type", "validated": true, "ani": 78.8128, "matched_fragments": 252, "total_fragments": 1802, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoalteromonas arctica", "strain": "strain=A 37-1-2", "accession": "GCA_000238395.4", "taxid": 394751, "species_taxid": 394751, "relation_to_type": "type", "validated": true, "ani": 78.6046, "matched_fragments": 258, "total_fragments": 1802, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoalteromonas distincta", "strain": "strain=ATCC 700518", "accession": "GCA_000814675.1", "taxid": 77608, "species_taxid": 77608, "relation_to_type": "type", "validated": true, "ani": 78.5436, "matched_fragments": 246, "total_fragments": 1802, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoalteromonas aliena", "strain": "strain=SW19", "accession": "GCA_014905615.1", "taxid": 247523, "species_taxid": 247523, "relation_to_type": "type", "validated": true, "ani": 78.503, "matched_fragments": 242, "total_fragments": 1802, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoalteromonas tetraodonis", "strain": "strain=NBRC 103034", "accession": "GCA_007991235.1", "taxid": 43659, "species_taxid": 43659, "relation_to_type": "suspected-type", "validated": true, "ani": 78.4286, "matched_fragments": 228, "total_fragments": 1802, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoalteromonas profundi", "strain": "strain=CGMCC 1.15394", "accession": "GCA_014642695.1", "taxid": 1774956, "species_taxid": 1774956, "relation_to_type": "type", "validated": true, "ani": 78.3378, "matched_fragments": 256, "total_fragments": 1802, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoalteromonas neustonica", "strain": "strain=PAMC 28425", "accession": "GCA_001653135.1", "taxid": 1840331, "species_taxid": 1840331, "relation_to_type": "type", "validated": true, "ani": 78.1619, "matched_fragments": 281, "total_fragments": 1802, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000238375.3", "gtdb_species": "s__Pseudoalteromonas citrea", "ani": 100.0, "matched_fragments": 1800, "total_fragments": 1802, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Pseudoalteromonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_003590335.1", "gtdb_species": "s__Pseudoalteromonas sp003590335", "ani": 89.8007, "matched_fragments": 1438, "total_fragments": 1802, "gtdb_taxonomy": 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"d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Pseudoalteromonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002964665.1", "gtdb_species": "s__Pseudoalteromonas sp002964665", "ani": 79.4295, "matched_fragments": 367, "total_fragments": 1802, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Pseudoalteromonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.99", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_001444405.1", "gtdb_species": "s__Pseudoalteromonas phenolica", "ani": 79.1485, "matched_fragments": 336, "total_fragments": 1802, "gtdb_taxonomy": 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"vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Pseudoalteromonas", "citrea" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }