{ "type": "genome", "identifier": "GCF_000241305.1", "organism": "Gordonia effusa NBRC 100432", "title": "Gordonia effusa NBRC 100432", "description": "na", "data type": "Genome sequencing and assembly", "organization": "National Institute of Technology and Evaluation", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000241305.1", "bioproject": "PRJNA224116", "biosample": "SAMD00041782", "wgs_master": "BAEH00000000.1", "refseq_category": "reference genome", "taxid": "1077974", "species_taxid": "263908", "organism_name": "Gordonia effusa NBRC 100432", "infraspecific_name": "strain=NBRC 100432", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2011/12/02", "asm_name": "ASM24130v2", "asm_submitter": "National Institute of Technology and Evaluation", "gbrs_paired_asm": "GCA_000241305.2", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/241/305/GCF_000241305.1_ASM24130v2", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4703019", "genome_size_ungapped": "4703019", "gc_percent": "62.500000", "replicon_count": "0", "scaffold_count": "133", "contig_count": "133", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000241305.1-RS_2024_09_02", "annotation_date": "2024-09-02", "total_gene_count": "4459", "protein_coding_gene_count": "4350", "non_coding_gene_count": "57", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2011-12-02", "dateModified": "2011-12-02", "datePublished": "2011-12-02", "_annotation": { "sample_count": 1, "sample_organism": [ "Gordonia effusa NBRC 100432" ], "sample_taxid": [ "1077974" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "not applicable" ], "sample_host_location_id": [], "data_size": "1.323 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4702453", "Number of Sequences": "129", "Longest Sequences (bp)": "158645", "N50 (bp)": "63761", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "62.5", "Number of CDSs": "4289", "Average Protein Length": "319.7", "Coding Ratio (%)": "87.5", "Number of rRNAs": "2", "Number of tRNAs": "49", "Number of CRISPRs": "7" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Gordonia effusa", "strain": "strain=NBRC 100432", "accession": "GCA_000241305.2", "taxid": 263908, "species_taxid": 263908, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1500, "total_fragments": 1505, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Gordonia asplenii", "strain": "strain=TBRC 11910", "accession": "GCA_012933505.1", "taxid": 2725283, "species_taxid": 2725283, "relation_to_type": "type", "validated": true, "ani": 80.0201, "matched_fragments": 821, "total_fragments": 1505, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gordonia insulae", "strain": "strain=MMS17-SY073", "accession": "GCA_003855095.1", "taxid": 2420509, "species_taxid": 2420509, "relation_to_type": "type", "validated": true, "ani": 78.19, "matched_fragments": 386, "total_fragments": 1505, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gordonia paraffinivorans", "strain": "strain=NBRC 108238", "accession": "GCA_000344155.1", "taxid": 175628, "species_taxid": 175628, "relation_to_type": "type", "validated": true, "ani": 78.122, "matched_fragments": 389, "total_fragments": 1505, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gordonia desulfuricans", "strain": "strain=213E", "accession": "GCA_010119475.1", "taxid": 89051, "species_taxid": 89051, "relation_to_type": "type", "validated": true, "ani": 78.0955, "matched_fragments": 405, "total_fragments": 1505, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gordonia lacunae", "strain": "strain=BS2", "accession": "GCA_002149015.1", "taxid": 417102, "species_taxid": 417102, "relation_to_type": "type", "validated": true, "ani": 78.0608, "matched_fragments": 378, "total_fragments": 1505, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gordonia westfalica", "strain": "strain=DSM 44215", "accession": "GCA_900105725.1", "taxid": 158898, "species_taxid": 158898, "relation_to_type": "type", "validated": true, "ani": 78.0524, "matched_fragments": 395, "total_fragments": 1505, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gordonia alkanivorans", "strain": "strain=NBRC 16433", "accession": "GCA_000225505.1", "taxid": 84096, "species_taxid": 84096, "relation_to_type": "type", "validated": true, "ani": 78.0413, "matched_fragments": 379, "total_fragments": 1505, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gordonia rubripertincta", "strain": "strain=ATCC 14352", "accession": "GCA_012396225.1", "taxid": 36822, "species_taxid": 36822, "relation_to_type": "type", "validated": true, "ani": 78.0163, "matched_fragments": 390, "total_fragments": 1505, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gordonia hankookensis", "strain": "strain=ON-33", "accession": "GCA_014673215.1", "taxid": 589403, "species_taxid": 589403, "relation_to_type": "type", "validated": true, "ani": 77.9839, "matched_fragments": 356, "total_fragments": 1505, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gordonia rubripertincta", "strain": "strain=NBRC 101908", "accession": "GCA_000327325.1", "taxid": 36822, "species_taxid": 36822, "relation_to_type": "type", "validated": true, "ani": 77.9638, "matched_fragments": 386, "total_fragments": 1505, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gordonia soli", "strain": "strain=NBRC 108243", "accession": "GCA_000334455.1", "taxid": 320799, "species_taxid": 320799, "relation_to_type": "type", "validated": true, "ani": 77.9101, "matched_fragments": 365, "total_fragments": 1505, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gordonia bronchialis", "strain": "strain=FDAARGOS_1594", "accession": "GCA_020731255.1", "taxid": 2054, "species_taxid": 2054, "relation_to_type": "type", "validated": true, "ani": 77.9006, "matched_fragments": 427, "total_fragments": 1505, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gordonia rhizosphera", "strain": "strain=NBRC 16068", "accession": "GCA_000298195.1", "taxid": 83341, "species_taxid": 83341, "relation_to_type": "type", "validated": true, "ani": 77.8998, "matched_fragments": 367, "total_fragments": 1505, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gordonia bronchialis", "strain": "strain=NCTC10667", "accession": "GCA_900450805.1", "taxid": 2054, "species_taxid": 2054, "relation_to_type": "type", "validated": true, "ani": 77.889, "matched_fragments": 429, "total_fragments": 1505, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gordonia pseudamarae", "strain": "strain=CON9", "accession": "GCA_025273675.1", "taxid": 2831662, "species_taxid": 2831662, "relation_to_type": "type", "validated": true, "ani": 77.8859, "matched_fragments": 351, "total_fragments": 1505, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000241305.1", 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"vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Gordonia", "effusa", "NBRC", "100432" ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }