{ "type": "genome", "identifier": "GCF_000241325.1", "organism": "Gordonia polyisoprenivorans NBRC 16320 = JCM 10675", "title": "Gordonia polyisoprenivorans NBRC 16320 = JCM 10675", "description": "na", "data type": "Genome sequencing and assembly", "organization": "National Institute of Technology and Evaluation", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000241325.1", "bioproject": "PRJNA224116", "biosample": "SAMD00041829", "wgs_master": "BAEI00000000.1", "refseq_category": "na", "taxid": "1077976", "species_taxid": "84595", "organism_name": "Gordonia polyisoprenivorans NBRC 16320 = JCM 10675", "infraspecific_name": "strain=NBRC 16320", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2011/12/02", "asm_name": "ASM24132v2", "asm_submitter": "National Institute of Technology and Evaluation", "gbrs_paired_asm": "GCA_000241325.2", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/241/325/GCF_000241325.1_ASM24132v2", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "6285478", "genome_size_ungapped": "6285478", "gc_percent": "67.000000", "replicon_count": "0", "scaffold_count": "113", "contig_count": "113", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000241325.1-RS_2024_09_02", "annotation_date": "2024-09-02", "total_gene_count": "5649", "protein_coding_gene_count": "5498", "non_coding_gene_count": "54", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2011-12-02", "dateModified": "2011-12-02", "datePublished": "2011-12-02", "_annotation": { "sample_count": 1, "sample_organism": [ "Gordonia polyisoprenivorans NBRC 16320 = JCM 10675" ], "sample_taxid": [ "1077976" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "not applicable" ], "sample_host_location_id": [], "data_size": "1.722 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 95.83, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "6284621", "Number of Sequences": "107", "Longest Sequences (bp)": "607336", "N50 (bp)": "141780", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "66.9", "Number of CDSs": "5618", "Average Protein Length": "335.4", "Coding Ratio (%)": "90.0", "Number of rRNAs": "3", "Number of tRNAs": "58", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Gordonia polyisoprenivorans", "strain": "strain=NBRC 16320", "accession": "GCA_000241325.2", "taxid": 84595, "species_taxid": 84595, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2046, "total_fragments": 2049, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Gordonia polyisoprenivorans", "strain": "strain=ATCC BAA-14", "accession": "GCA_012396285.1", "taxid": 84595, "species_taxid": 84595, "relation_to_type": "type", "validated": true, "ani": 99.9991, "matched_fragments": 2043, "total_fragments": 2049, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Gordonia oryzae", "strain": "strain=RS15-1S", "accession": "GCA_003797185.1", "taxid": 2487349, "species_taxid": 2487349, "relation_to_type": "type", "validated": true, "ani": 92.5191, "matched_fragments": 1326, "total_fragments": 2049, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gordonia desulfuricans", "strain": "strain=NBRC 100010", "accession": "GCA_001485495.1", "taxid": 89051, "species_taxid": 89051, "relation_to_type": "type", 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"min_intra_species_af": "0.90", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_004193205.1", "gtdb_species": "s__Gordonia sediminis", "ani": 79.6324, "matched_fragments": 876, "total_fragments": 2049, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Gordonia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.29, "cell_length": -0.067, "doubling_h": null, "growth_tmp": 28.0, "optimum_tmp": 29.25, "optimum_ph": 7.479, "genome_size": 5734030.143, "gc_content": 66.346, "coding_genes": 5078.0, "rRNA16S_genes": 3.0, "tRNA_genes": 49.0, "gram_stain": 1.0, "sporulation": 0.0, "motility": 0.0, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 0.8, "coccus_cell_shape": 0.15, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.05, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Gordonia", "polyisoprenivorans", "NBRC", "16320", "=", "JCM", "10675" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }