{ "type": "genome", "identifier": "GCF_000241345.1", "organism": "Gordonia amarae NBRC 15530", "title": "Gordonia amarae NBRC 15530", "description": "na", "data type": "Genome sequencing and assembly", "organization": "National Institute of Technology and Evaluation", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000241345.1", "bioproject": "PRJNA224116", "biosample": "SAMD00041822", "wgs_master": "BAED00000000.1", "refseq_category": "na", "taxid": "1075090", "species_taxid": "36821", "organism_name": "Gordonia amarae NBRC 15530", "infraspecific_name": "strain=NBRC 15530", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2011/11/25", "asm_name": "ASM24134v2", "asm_submitter": "National Institute of Technology and Evaluation", "gbrs_paired_asm": "GCA_000241345.2", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/241/345/GCF_000241345.1_ASM24134v2", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5306375", "genome_size_ungapped": "5306375", "gc_percent": "67.500000", "replicon_count": "0", "scaffold_count": "83", "contig_count": "83", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000241345.1-RS_2024_09_02", "annotation_date": "2024-09-02", "total_gene_count": "4749", "protein_coding_gene_count": "4617", "non_coding_gene_count": "60", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2011-11-25", "dateModified": "2011-11-25", "datePublished": "2011-11-25", "_annotation": { "sample_count": 1, "sample_organism": [ "Gordonia amarae NBRC 15530" ], "sample_taxid": [ "1075090" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "not applicable" ], "sample_host_location_id": [], "data_size": "1.451 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5305998", "Number of Sequences": "80", "Longest Sequences (bp)": "326982", "N50 (bp)": "117263", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "67.4", "Number of CDSs": "4676", "Average Protein Length": "336.0", "Coding Ratio (%)": "88.8", "Number of rRNAs": "3", "Number of tRNAs": "59", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Gordonia amarae", "strain": "strain=NBRC 15530", "accession": "GCA_000241345.2", "taxid": 36821, "species_taxid": 36821, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1724, "total_fragments": 1727, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Gordonia pseudamarae", "strain": "strain=CON9", "accession": "GCA_025273675.1", "taxid": 2831662, "species_taxid": 2831662, "relation_to_type": "type", "validated": true, "ani": 85.0049, "matched_fragments": 1216, "total_fragments": 1727, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gordonia alkanivorans", "strain": "strain=NBRC 16433", "accession": "GCA_000225505.1", "taxid": 84096, "species_taxid": 84096, "relation_to_type": "type", "validated": true, "ani": 80.0032, "matched_fragments": 700, "total_fragments": 1727, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gordonia paraffinivorans", "strain": "strain=NBRC 108238", "accession": "GCA_000344155.1", "taxid": 175628, "species_taxid": 175628, "relation_to_type": "type", "validated": true, "ani": 79.976, "matched_fragments": 708, "total_fragments": 1727, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gordonia namibiensis", "strain": "strain=NBRC 108229", "accession": "GCA_000298235.1", "taxid": 168480, "species_taxid": 168480, "relation_to_type": "type", "validated": true, "ani": 79.9363, "matched_fragments": 700, "total_fragments": 1727, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gordonia rubripertincta", "strain": "strain=NBRC 101908", "accession": "GCA_000327325.1", "taxid": 36822, "species_taxid": 36822, "relation_to_type": "type", "validated": true, "ani": 79.7907, "matched_fragments": 704, "total_fragments": 1727, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gordonia westfalica", "strain": "strain=DSM 44215", "accession": "GCA_900105725.1", "taxid": 158898, "species_taxid": 158898, "relation_to_type": "type", "validated": true, "ani": 79.7503, "matched_fragments": 765, "total_fragments": 1727, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gordonia rubripertincta", "strain": "strain=ATCC 14352", "accession": "GCA_012396225.1", "taxid": 36822, "species_taxid": 36822, "relation_to_type": "type", "validated": true, "ani": 79.7071, "matched_fragments": 711, "total_fragments": 1727, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gordonia bronchialis", "strain": "strain=FDAARGOS_1594", "accession": "GCA_020731255.1", "taxid": 2054, "species_taxid": 2054, "relation_to_type": "type", "validated": true, "ani": 79.6879, "matched_fragments": 723, "total_fragments": 1727, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gordonia bronchialis", "strain": "strain=DSM 43247", "accession": "GCA_000024785.1", "taxid": 2054, "species_taxid": 2054, "relation_to_type": "type", "validated": true, "ani": 79.667, "matched_fragments": 727, "total_fragments": 1727, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gordonia bronchialis", "strain": "strain=NCTC10667", "accession": "GCA_900450805.1", "taxid": 2054, "species_taxid": 2054, "relation_to_type": "type", "validated": true, "ani": 79.6039, "matched_fragments": 745, "total_fragments": 1727, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gordonia lacunae", "strain": "strain=BS2", "accession": "GCA_002149015.1", "taxid": 417102, "species_taxid": 417102, "relation_to_type": "type", "validated": true, "ani": 79.5676, "matched_fragments": 685, "total_fragments": 1727, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gordonia terrae", "strain": "strain=NRRL B-16283", "accession": "GCA_003183825.1", "taxid": 2055, "species_taxid": 2055, "relation_to_type": "suspected-type", "validated": true, "ani": 79.4855, "matched_fragments": 669, "total_fragments": 1727, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gordonia rhizosphera", "strain": "strain=NBRC 16068", 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79.8107, "matched_fragments": 701, "total_fragments": 1727, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Gordonia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.55", "min_intra_species_ani": "98.07", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.87", "num_clustered_genomes": 6, "status": "-" }, { "accession": "GCF_900105725.1", "gtdb_species": "s__Gordonia westfalica", "ani": 79.7891, "matched_fragments": 759, "total_fragments": 1727, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Gordonia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000024785.1", "gtdb_species": "s__Gordonia bronchialis", "ani": 79.6705, "matched_fragments": 726, 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"vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Gordonia", "amarae", "NBRC", "15530" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }