{ "type": "genome", "identifier": "GCF_000241525.1", "organism": "Comamonas testosteroni ATCC 11996", "title": "Comamonas testosteroni ATCC 11996", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Institute of Toxicology and Pharmacology for Natural Scientists, University Medical School, Schleswig-Holstein, Campus Kiel", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000241525.1", "bioproject": "PRJNA224116", "biosample": "SAMN02470044", "wgs_master": "AHIL00000000.1", "refseq_category": "na", "taxid": "1009852", "species_taxid": "285", "organism_name": "Comamonas testosteroni ATCC 11996", "infraspecific_name": "strain=ATCC 11996", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2012/01/06", "asm_name": "ASM24152v2", "asm_submitter": "Institute of Toxicology and Pharmacology for Natural Scientists, University Medical School, Schleswig-Holstein, Campus Kiel", "gbrs_paired_asm": "GCA_000241525.2", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/241/525/GCF_000241525.1_ASM24152v2", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5410155", "genome_size_ungapped": "5410155", "gc_percent": "61.500000", "replicon_count": "0", "scaffold_count": "63", "contig_count": "63", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000241525.1-RS_2024_03_27", "annotation_date": "2024-03-27", "total_gene_count": "5002", "protein_coding_gene_count": "4859", "non_coding_gene_count": "73", "pubmed_id": "22374961" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2012-01-06", "dateModified": "2012-01-06", "datePublished": "2012-01-06", "_annotation": { "sample_count": 1, "sample_organism": [ "Comamonas testosteroni ATCC 11996" ], "sample_taxid": [ "1009852" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [], "sample_host_location_id": [], "data_size": "1.512 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5410155", "Number of Sequences": "63", "Longest Sequences (bp)": "538476", "N50 (bp)": "250929", "Gap Ratio (%)": "0.000055", "GCcontent (%)": "61.5", "Number of CDSs": "4874", "Average Protein Length": "319.5", "Coding Ratio (%)": "86.4", "Number of rRNAs": "2", "Number of tRNAs": "71", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Comamonas testosteroni", "strain": "strain=ATCC 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"species_taxid": 363952, "relation_to_type": "type", "validated": true, "ani": 94.3503, "matched_fragments": 1499, "total_fragments": 1774, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Comamonas thiooxydans", "strain": "strain=DSM 17888", "accession": "GCA_000964545.1", "taxid": 363952, "species_taxid": 363952, "relation_to_type": "type", "validated": true, "ani": 94.333, "matched_fragments": 1501, "total_fragments": 1774, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Comamonas fluminis", "strain": "strain=CJ34", "accession": "GCA_019186805.1", "taxid": 2796366, "species_taxid": 2796366, "relation_to_type": "type", "validated": true, "ani": 84.6207, "matched_fragments": 1137, "total_fragments": 1774, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Comamonas koreensis", "strain": "strain=KCTC 12005", "accession": "GCA_021026195.1", "taxid": 160825, "species_taxid": 160825, "relation_to_type": "type", "validated": true, "ani": 80.3862, "matched_fragments": 661, "total_fragments": 1774, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acidovorax facilis", "strain": "strain=DSM 649", "accession": "GCA_023913775.1", "taxid": 12917, "species_taxid": 12917, "relation_to_type": "type", "validated": true, "ani": 79.5269, "matched_fragments": 612, "total_fragments": 1774, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hydrogenophaga crocea", "strain": "strain=BA0156", "accession": "GCA_011388215.1", "taxid": 2716225, "species_taxid": 2716225, "relation_to_type": "type", "validated": true, "ani": 78.7103, "matched_fragments": 487, "total_fragments": 1774, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Xylophilus ampelinus", "strain": "strain=CFBP 1192", "accession": "GCA_024832295.1", "taxid": 54067, "species_taxid": 54067, "relation_to_type": "type", "validated": true, "ani": 78.3562, "matched_fragments": 415, "total_fragments": 1774, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000241525.1", "gtdb_species": "s__Comamonas testosteroni", "ani": 100.0, "matched_fragments": 1772, "total_fragments": 1774, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Comamonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.74", "min_intra_species_ani": "98.70", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.94", "num_clustered_genomes": 6, "status": "conclusive" }, { "accession": "GCF_000761245.1", "gtdb_species": "s__Comamonas testosteroni_C", "ani": 94.5663, "matched_fragments": 1544, "total_fragments": 1774, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Comamonas", "ani_circumscription_radius": 95.0, 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"97.51", "min_intra_species_ani": "95.23", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.87", "num_clustered_genomes": 29, "status": "-" }, { "accession": "GCF_000739375.1", "gtdb_species": "s__Comamonas testosteroni_B", "ani": 92.915, "matched_fragments": 1503, "total_fragments": 1774, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Comamonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.94", "min_intra_species_ani": "95.50", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.85", "num_clustered_genomes": 10, "status": "-" }, { "accession": "GCA_009360615.1", "gtdb_species": "s__Comamonas sp009360615", "ani": 90.9864, "matched_fragments": 1306, "total_fragments": 1774, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Comamonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.253, "cell_length": 0.15, "doubling_h": null, "growth_tmp": 29.0, "optimum_tmp": 30.0, "optimum_ph": 7.187, "genome_size": 5642149.455, "gc_content": 61.49, "coding_genes": 5102.667, "rRNA16S_genes": 5.75, "tRNA_genes": 87.25, "gram_stain": 0.0, "sporulation": 0.0, "motility": 1.0, "range_salinity": 1.0, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Comamonas", "testosteroni", "ATCC", "11996" ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }