{ "type": "genome", "identifier": "GCF_000241955.1", "organism": "Rahnella aquatilis CIP 78.65 = ATCC 33071", "title": "Rahnella aquatilis CIP 78.65 = ATCC 33071", "description": "na", "data type": "Genome sequencing and assembly", "organization": "JGI", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000241955.1", "bioproject": "PRJNA224116", "biosample": "SAMN02261385", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "745277", "species_taxid": "34038", "organism_name": "Rahnella aquatilis CIP 78.65 = ATCC 33071", "infraspecific_name": "strain=CIP 78.65", "isolate": "na", "version_status": "latest", "assembly_level": "Chromosome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2012/01/10", "asm_name": "ASM24195v1", "asm_submitter": "JGI", "gbrs_paired_asm": "GCA_000241955.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/241/955/GCF_000241955.1_ASM24195v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5448900", "genome_size_ungapped": "5446950", "gc_percent": "52.000000", "replicon_count": "4", "scaffold_count": "4", "contig_count": "4", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000241955.1-RS_2024_03_27", "annotation_date": "2024-03-27", "total_gene_count": "4997", "protein_coding_gene_count": "4821", "non_coding_gene_count": "108", "pubmed_id": "22582378" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2012-01-10", "dateModified": "2012-01-10", "datePublished": "2012-01-10", "_annotation": { "sample_count": 1, "sample_organism": [ "Rahnella aquatilis CIP 78.65 = ATCC 33071" ], "sample_taxid": [ "745277" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], 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"total_fragments": 1814, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Rahnella aquatilis", "strain": "strain=ATCC 33071", "accession": "GCA_000735505.1", "taxid": 34038, "species_taxid": 34038, "relation_to_type": "suspected-type", "validated": true, "ani": 99.9408, "matched_fragments": 1691, "total_fragments": 1814, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Rahnella aceris", "strain": "strain=SAP-19", "accession": "GCA_011684115.1", "taxid": 2703885, "species_taxid": 2703885, "relation_to_type": "type", "validated": true, "ani": 92.6873, "matched_fragments": 1522, "total_fragments": 1814, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rahnella perminowiae", "strain": "strain=SL6", "accession": "GCA_019049755.1", "taxid": 2816244, "species_taxid": 2816244, "relation_to_type": "type", "validated": true, "ani": 91.5911, "matched_fragments": 1336, "total_fragments": 1814, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rahnella victoriana", "strain": "strain=DSM 27397", "accession": "GCA_004330295.1", "taxid": 1510570, "species_taxid": 1510570, "relation_to_type": "type", "validated": true, "ani": 89.7079, "matched_fragments": 1401, "total_fragments": 1814, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rahnella bonaserana", "strain": "strain=H11b", "accession": "GCA_019049675.1", "taxid": 2816248, "species_taxid": 2816248, "relation_to_type": "type", "validated": true, "ani": 88.1678, "matched_fragments": 1426, "total_fragments": 1814, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rahnella ecdela", "strain": "strain=FRB 231", "accession": "GCA_019049625.1", "taxid": 2816250, "species_taxid": 2816250, "relation_to_type": "type", "validated": true, "ani": 87.7689, "matched_fragments": 1345, "total_fragments": 1814, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rahnella bruchi", 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sp019049625", "ani": 87.7689, "matched_fragments": 1346, "total_fragments": 1814, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Rahnella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003614975.1", "gtdb_species": "s__Rahnella bruchi", "ani": 87.6161, "matched_fragments": 1321, "total_fragments": 1814, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Rahnella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": null, "doubling_h": null, 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