{ "type": "genome", "identifier": "GCF_000242335.1", "organism": "Prevotella dentalis DSM 3688", "title": "Prevotella dentalis DSM 3688", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000242335.1", "bioproject": "PRJNA224116", "biosample": "SAMN02232045", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "908937", "species_taxid": "52227", "organism_name": "Prevotella dentalis DSM 3688", "infraspecific_name": "strain=DSM 3688", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2012/12/27", "asm_name": "ASM24233v3", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_000242335.3", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/242/335/GCF_000242335.1_ASM24233v3", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3350206", "genome_size_ungapped": "3350206", "gc_percent": "56.000000", "replicon_count": "4", "scaffold_count": "4", "contig_count": "4", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000242335.1-RS_2024_12_09", "annotation_date": "2024-12-09", "total_gene_count": "2657", "protein_coding_gene_count": "2521", "non_coding_gene_count": "78", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2012-12-27", "dateModified": "2012-12-27", "datePublished": "2012-12-27", "_annotation": { "sample_count": 1, "sample_organism": [ "Prevotella dentalis DSM 3688" ], "sample_taxid": [ "908937" ], "sample_host_organism": [ "Homo sapiens" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Missing" ], "sample_host_location_id": [], "data_size": "0.946 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3350206", "Number of Sequences": "4", "Longest Sequences (bp)": "1890695", "N50 (bp)": "1890695", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "55.9", "Number of CDSs": "2607", "Average Protein Length": "375.7", "Coding Ratio (%)": "87.7", "Number of rRNAs": "15", "Number of tRNAs": "64", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Prevotella dentalis", "strain": "strain=DSM 3688", "accession": "GCA_000242335.3", "taxid": 52227, "species_taxid": 52227, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1104, 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"below_threshold" }, { "organism_name": "Prevotella illustrans", "strain": "strain=A2931", "accession": "GCA_017426725.1", "taxid": 2800387, "species_taxid": 2800387, "relation_to_type": "type", "validated": true, "ani": 78.6824, "matched_fragments": 125, "total_fragments": 1115, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella buccae", "strain": "strain=ATCC 33574", "accession": "GCA_000184945.1", "taxid": 28126, "species_taxid": 28126, "relation_to_type": "type", "validated": true, "ani": 78.6591, "matched_fragments": 245, "total_fragments": 1115, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella bergensis", "strain": "strain=DSM 17361", "accession": "GCA_000160535.1", "taxid": 242750, "species_taxid": 242750, "relation_to_type": "type", "validated": true, "ani": 78.3615, "matched_fragments": 235, "total_fragments": 1115, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella denticola", "strain": "strain=NCTC13067", "accession": "GCA_900454835.1", "taxid": 28129, "species_taxid": 28129, "relation_to_type": "type", "validated": true, "ani": 78.0822, "matched_fragments": 155, "total_fragments": 1115, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella colorans", "strain": "strain=DSM 100333", "accession": "GCA_003096815.1", "taxid": 1703337, "species_taxid": 1703337, "relation_to_type": "type", "validated": true, "ani": 77.916, "matched_fragments": 145, "total_fragments": 1115, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hallella faecis", "strain": "strain=CLA-AA-H145", "accession": "GCA_018789675.1", "taxid": 2841596, "species_taxid": 2841596, "relation_to_type": "type", "validated": true, "ani": 77.6943, "matched_fragments": 261, "total_fragments": 1115, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella denticola", "strain": "strain=DSM 20614", "accession": "GCA_000421205.1", 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