{ "type": "genome", "identifier": "GCF_000243235.1", "organism": "Gillisia limnaea DSM 15749", "title": "Gillisia limnaea DSM 15749", "description": "na", "data type": "Genome sequencing and assembly", "organization": "JGI", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000243235.1", "bioproject": "PRJNA224116", "biosample": "SAMN02261365", "wgs_master": "AHKR00000000.1", "refseq_category": "reference genome", "taxid": "865937", "species_taxid": "195907", "organism_name": "Gillisia limnaea DSM 15749", "infraspecific_name": "strain=DSM 15749", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2012/01/24", "asm_name": "ASM24323v1", "asm_submitter": "JGI", "gbrs_paired_asm": "GCA_000243235.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/243/235/GCF_000243235.1_ASM24323v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3966857", "genome_size_ungapped": "3963630", "gc_percent": "37.500000", "replicon_count": "0", "scaffold_count": "2", "contig_count": "35", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000243235.1-RS_2024_05_01", "annotation_date": "2024-05-01", "total_gene_count": "3524", "protein_coding_gene_count": "3437", "non_coding_gene_count": "50", "pubmed_id": "23450183" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2012-01-24", "dateModified": "2012-01-24", "datePublished": "2012-01-24", "_annotation": { "sample_count": 1, "sample_organism": [ "Gillisia limnaea DSM 15749" ], "sample_taxid": [ "865937" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Missing" ], "sample_host_location_id": [], "data_size": "1.105 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3966857", "Number of Sequences": "2", "Longest Sequences (bp)": "3558876", "N50 (bp)": "3558876", "Gap Ratio (%)": "0.081525", "GCcontent (%)": "37.6", "Number of CDSs": "3394", "Average Protein Length": "332.3", "Coding Ratio (%)": "85.3", "Number of rRNAs": "7", "Number of tRNAs": "44", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Gillisia limnaea", "strain": "strain=DSM 15749", "accession": "GCA_000243235.1", "taxid": 195907, "species_taxid": 195907, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1319, "total_fragments": 1321, "ani_threshold": 95, "status": "conclusive" }, { 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