{ "type": "genome", "identifier": "GCF_000243395.2", "organism": "Saccharomonospora glauca K62", "title": "Saccharomonospora glauca K62", "description": "na", "data type": "Genome sequencing and assembly", "organization": "JGI", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000243395.2", "bioproject": "PRJNA224116", "biosample": "SAMN02441787", "wgs_master": "AGJI00000000.2", "refseq_category": "reference genome", "taxid": "928724", "species_taxid": "40990", "organism_name": "Saccharomonospora glauca K62", "infraspecific_name": "strain=K62", "isolate": "na", "version_status": "latest", "assembly_level": "Chromosome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2012/04/18", "asm_name": "ASM24339v3", "asm_submitter": "JGI", "gbrs_paired_asm": "GCA_000243395.3", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/243/395/GCF_000243395.2_ASM24339v3", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4564108", "genome_size_ungapped": "4563208", "gc_percent": "69.000000", "replicon_count": "2", "scaffold_count": "2", "contig_count": "11", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000243395.2-RS_2024_12_13", "annotation_date": "2024-12-13", "total_gene_count": "4364", "protein_coding_gene_count": "4260", "non_coding_gene_count": "57", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2012-04-18", "dateModified": "2012-04-18", "datePublished": "2012-04-18", "_annotation": { "sample_count": 1, "sample_organism": [ "Saccharomonospora glauca K62" ], "sample_taxid": [ "928724" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [], "sample_host_location_id": [], "data_size": "1.236 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 2.78, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4564108", "Number of Sequences": "2", "Longest Sequences (bp)": "4538746", "N50 (bp)": "4538746", "Gap Ratio (%)": "0.019719", "GCcontent (%)": "69.1", "Number of CDSs": "4358", "Average Protein Length": "314.6", "Coding Ratio (%)": "90.1", "Number of rRNAs": "7", "Number of tRNAs": "56", "Number of CRISPRs": "7" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Saccharomonospora glauca", "strain": "strain=K62", "accession": "GCA_000243395.3", "taxid": 40990, "species_taxid": 40990, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1519, "total_fragments": 1520, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": 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