{ "type": "genome", "identifier": "GCF_000243695.2", "organism": "Leptospira kirschneri serovar Cynopteri str. 3522 CT", "title": "Leptospira kirschneri serovar Cynopteri str. 3522 CT", "description": "na", "data type": "Genome sequencing and assembly", "organization": "J. Craig Venter Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000243695.2", "bioproject": "PRJNA224116", "biosample": "SAMN02436434", "wgs_master": "AHMN00000000.2", "refseq_category": "reference genome", "taxid": "1049942", "species_taxid": "29507", "organism_name": "Leptospira kirschneri serovar Cynopteri str. 3522 CT", "infraspecific_name": "strain=3522 CT", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2013/06/21", "asm_name": "gls454049v02", "asm_submitter": "J. Craig Venter Institute", "gbrs_paired_asm": "GCA_000243695.3", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/243/695/GCF_000243695.2_gls454049v02", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4409424", "genome_size_ungapped": "4409424", "gc_percent": "36.000000", "replicon_count": "0", "scaffold_count": "24", "contig_count": "24", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000243695.2-RS_2024_03_29", "annotation_date": "2024-03-29", "total_gene_count": "3667", "protein_coding_gene_count": "3420", "non_coding_gene_count": "43", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2013-06-21", "dateModified": "2013-06-21", "datePublished": "2013-06-21", "_annotation": { "sample_count": 1, "sample_organism": [ "Leptospira kirschneri serovar Cynopteri str. 3522 CT" ], "sample_taxid": [ "1049942" ], "sample_host_organism": [ "Chiroptera" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Indonesia: Jakarta, Java" ], "sample_host_location_id": [], "data_size": "1.225 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 91.67, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4409424", "Number of Sequences": "24", "Longest Sequences (bp)": "945915", "N50 (bp)": "415138", "Gap Ratio (%)": "0.000113", "GCcontent (%)": "35.9", "Number of CDSs": "3543", "Average Protein Length": "314.7", "Coding Ratio (%)": "75.9", "Number of rRNAs": "3", "Number of tRNAs": "38", "Number of CRISPRs": "5" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Leptospira kirschneri", "strain": "strain=3522 CT", "accession": "GCA_000243695.3", "taxid": 29507, "species_taxid": 29507, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1456, "total_fragments": 1457, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Leptospira interrogans", "strain": "strain=ATCC 43642", "accession": "GCA_900156205.1", "taxid": 173, "species_taxid": 173, "relation_to_type": "type", "validated": true, "ani": 90.8215, "matched_fragments": 1304, "total_fragments": 1457, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Leptospira interrogans", "strain": "strain=RGA", "accession": "GCA_000343165.1", "taxid": 173, "species_taxid": 173, "relation_to_type": "type", "validated": true, "ani": 90.8133, "matched_fragments": 1291, "total_fragments": 1457, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Leptospira noguchii", "strain": "strain=CZ214", "accession": "GCA_000306255.2", "taxid": 28182, "species_taxid": 28182, "relation_to_type": "suspected-type", "validated": true, "ani": 89.7202, "matched_fragments": 1281, "total_fragments": 1457, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Leptospira alstonii", "strain": "strain=79601", "accession": "GCA_000347175.1", "taxid": 28452, "species_taxid": 28452, "relation_to_type": "type", "validated": true, "ani": 80.7938, "matched_fragments": 926, "total_fragments": 1457, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Leptospira alexanderi", "strain": "strain=L 60", "accession": "GCA_000243815.3", "taxid": 100053, "species_taxid": 100053, "relation_to_type": "type", "validated": true, "ani": 80.2712, "matched_fragments": 869, "total_fragments": 1457, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Leptospira kmetyi", "strain": "strain=Bejo-Iso9", "accession": "GCA_000243735.3", "taxid": 408139, "species_taxid": 408139, 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