{ "type": "genome", "identifier": "GCF_000245735.1", "organism": "Alishewanella jeotgali KCTC 22429", "title": "Alishewanella jeotgali KCTC 22429", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Department of Environmental Science and Ecological Engineering, Korea University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000245735.1", "bioproject": "PRJNA224116", "biosample": "SAMN02470203", "wgs_master": "AHTH00000000.1", "refseq_category": "reference genome", "taxid": "1129374", "species_taxid": "545533", "organism_name": "Alishewanella jeotgali KCTC 22429", "infraspecific_name": "strain=KCTC 22429", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2012/02/03", "asm_name": "ASM24573v2", "asm_submitter": "Department of Environmental Science and Ecological Engineering, Korea University", "gbrs_paired_asm": "GCA_000245735.2", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/245/735/GCF_000245735.1_ASM24573v2", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3831357", "genome_size_ungapped": "3831357", "gc_percent": "50.500000", "replicon_count": "0", "scaffold_count": "65", "contig_count": "65", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000245735.1-RS_2024_03_20", "annotation_date": "2024-03-20", "total_gene_count": "3612", "protein_coding_gene_count": "3480", "non_coding_gene_count": "79", "pubmed_id": "22461542" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2012-02-03", "dateModified": "2012-02-03", "datePublished": "2012-02-03", "_annotation": { "sample_count": 1, "sample_organism": [ "Alishewanella jeotgali KCTC 22429" ], "sample_taxid": [ "1129374" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea" ], "sample_host_location_id": [], "data_size": "1.089 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3831357", "Number of Sequences": "65", "Longest Sequences (bp)": "572604", "N50 (bp)": "127457", "Gap Ratio (%)": "0.000052", "GCcontent (%)": "50.7", "Number of CDSs": "3539", "Average Protein Length": "324.5", "Coding Ratio (%)": "89.9", "Number of rRNAs": "6", "Number of tRNAs": "66", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Alishewanella jeotgali", "strain": "strain=KCTC 22429", "accession": "GCA_000245735.2", "taxid": 545533, "species_taxid": 545533, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1248, "total_fragments": 1248, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Alishewanella aestuarii", "strain": "strain=B11", "accession": "GCA_000280055.1", "taxid": 453835, "species_taxid": 453835, "relation_to_type": "type", "validated": true, "ani": 95.6372, "matched_fragments": 946, "total_fragments": 1248, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Alishewanella agri", "strain": "strain=BL06", "accession": "GCA_000272005.1", "taxid": 553384, "species_taxid": 553384, "relation_to_type": "type", "validated": true, "ani": 89.3581, "matched_fragments": 839, "total_fragments": 1248, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alishewanella longhuensis", "strain": "strain=CGMCC 1.7003", "accession": "GCA_014653435.1", "taxid": 1091037, "species_taxid": 1091037, "relation_to_type": "type", 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297, "total_fragments": 1248, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rheinheimera nanhaiensis", "strain": "strain=E407-8", "accession": "GCA_000296695.1", "taxid": 1163621, "species_taxid": 1163621, "relation_to_type": "type", "validated": true, "ani": 78.8132, "matched_fragments": 371, "total_fragments": 1248, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rheinheimera lutimaris", "strain": "strain=YQF-2", "accession": "GCA_013283795.1", "taxid": 2740584, "species_taxid": 2740584, "relation_to_type": "type", "validated": true, "ani": 78.7071, "matched_fragments": 325, "total_fragments": 1248, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rheinheimera hassiensis", "strain": "strain=LMG 27268", "accession": "GCA_022436675.1", "taxid": 1193627, "species_taxid": 1193627, "relation_to_type": "type", "validated": true, "ani": 78.6661, "matched_fragments": 341, "total_fragments": 1248, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arsukibacterium indicum", "strain": "strain=SM2107", "accession": "GCA_019100565.1", "taxid": 2848612, "species_taxid": 2848612, "relation_to_type": "type", "validated": true, "ani": 78.5909, "matched_fragments": 339, "total_fragments": 1248, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rheinheimera maricola", "strain": "strain=MA-13", "accession": "GCA_017824735.1", "taxid": 2793282, "species_taxid": 2793282, "relation_to_type": "type", "validated": true, "ani": 78.247, "matched_fragments": 292, "total_fragments": 1248, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rheinheimera maricola", "strain": "strain=MA-13", "accession": "GCA_016918075.2", "taxid": 2793282, "species_taxid": 2793282, "relation_to_type": "type", "validated": true, "ani": 78.2363, "matched_fragments": 299, "total_fragments": 1248, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pararheinheimera mesophila", "strain": "strain=IITR13", "accession": "GCA_003862465.1", "taxid": 1547515, "species_taxid": 1547515, "relation_to_type": "type", "validated": true, "ani": 77.882, "matched_fragments": 205, "total_fragments": 1248, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pararheinheimera mesophila", "strain": "strain=IITR-13", "accession": "GCA_000986865.1", "taxid": 1547515, "species_taxid": 1547515, "relation_to_type": "type", "validated": true, "ani": 77.8315, "matched_fragments": 196, "total_fragments": 1248, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shewanella jiangmenensis", "strain": "strain=JM162201", "accession": "GCA_018596335.1", "taxid": 2837387, "species_taxid": 2837387, "relation_to_type": "type", "validated": true, "ani": 76.0776, "matched_fragments": 63, "total_fragments": 1248, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000245735.1", "gtdb_species": "s__Alishewanella jeotgali", "ani": 100.0, "matched_fragments": 1248, "total_fragments": 1248, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Alishewanella", "ani_circumscription_radius": 95.6353, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_000280055.1", "gtdb_species": "s__Alishewanella aestuarii", "ani": 95.6258, "matched_fragments": 947, "total_fragments": 1248, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Alishewanella", "ani_circumscription_radius": 95.6353, "mean_intra_species_ani": "96.26", "min_intra_species_ani": "96.26", "mean_intra_species_af": "0.87", "min_intra_species_af": "0.87", 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