{
    "type": "genome",
    "identifier": "GCF_000245775.1",
    "organism": "Megamonas funiformis YIT 11815",
    "title": "Megamonas funiformis YIT 11815",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Broad Institute",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_000245775.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN02463866",
        "wgs_master": "ADMB00000000.1",
        "refseq_category": "na",
        "taxid": "742816",
        "species_taxid": "437897",
        "organism_name": "Megamonas funiformis YIT 11815",
        "infraspecific_name": "strain=YIT 11815",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2012/02/07",
        "asm_name": "Mega_funi_YIT_11815_V1",
        "asm_submitter": "Broad Institute",
        "gbrs_paired_asm": "GCA_000245775.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/245/775/GCF_000245775.1_Mega_funi_YIT_11815_V1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "2562512",
        "genome_size_ungapped": "2533141",
        "gc_percent": "31.500000",
        "replicon_count": "0",
        "scaffold_count": "13",
        "contig_count": "116",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_000245775.1-RS_2024_03_31",
        "annotation_date": "2024-03-31",
        "total_gene_count": "2552",
        "protein_coding_gene_count": "2476",
        "non_coding_gene_count": "59",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2012-02-07",
    "dateModified": "2012-02-07",
    "datePublished": "2012-02-07",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Megamonas funiformis YIT 11815"
        ],
        "sample_taxid": [
            "742816"
        ],
        "sample_host_organism": [
            "Homo sapiens"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "not determined"
        ],
        "sample_host_location_id": [],
        "data_size": "0.696 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "2562512",
        "Number of Sequences": "13",
        "Longest Sequences (bp)": "1636111",
        "N50 (bp)": "1636111",
        "Gap Ratio (%)": "1.146180",
        "GCcontent (%)": "31.5",
        "Number of CDSs": "2504",
        "Average Protein Length": "298.9",
        "Coding Ratio (%)": "87.6",
        "Number of rRNAs": "10",
        "Number of tRNAs": "42",
        "Number of CRISPRs": "6"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Megamonas funiformis",
                "strain": "strain=YIT 11815",
                "accession": "GCA_000245775.1",
                "taxid": 437897,
                "species_taxid": 437897,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9998,
                "matched_fragments": 845,
                "total_fragments": 847,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Megamonas funiformis",
                "strain": "strain=JCM 14723",
                "accession": "GCA_010669225.1",
                "taxid": 437897,
                "species_taxid": 437897,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.923,
                "matched_fragments": 839,
                "total_fragments": 847,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Megamonas hypermegale",
                "strain": "strain=NCTC10570",
                "accession": "GCA_900187035.1",
                "taxid": 158847,
                "species_taxid": 158847,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.5109,
                "matched_fragments": 456,
                "total_fragments": 847,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Megamonas hypermegale",
                "strain": "strain=DSM 1672",
                "accession": "GCA_000423385.1",
                "taxid": 158847,
                "species_taxid": 158847,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.2941,
                "matched_fragments": 449,
                "total_fragments": 847,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pectinatus brassicae",
                "strain": "strain=DSM 24661",
                "accession": "GCA_014201835.1",
                "taxid": 862415,
                "species_taxid": 862415,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.2346,
                "matched_fragments": 86,
                "total_fragments": 847,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pectinatus sottacetonis",
                "strain": "strain=MB620",
                "accession": "GCA_015732155.1",
                "taxid": 1002795,
                "species_taxid": 1002795,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.9549,
                "matched_fragments": 75,
                "total_fragments": 847,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_010669225.1",
                "gtdb_species": "s__Megamonas funiformis",
                "ani": 99.9232,
                "matched_fragments": 838,
                "total_fragments": 847,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Selenomonadales;f__Selenomonadaceae;g__Megamonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.89",
                "min_intra_species_ani": "97.23",
                "mean_intra_species_af": "0.89",
                "min_intra_species_af": "0.80",
                "num_clustered_genomes": 26,
                "status": "conclusive"
            },
            {
                "accession": "GCA_900556715.1",
                "gtdb_species": "s__Megamonas sp900556715",
                "ani": 93.0016,
                "matched_fragments": 281,
                "total_fragments": 847,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Selenomonadales;f__Selenomonadaceae;g__Megamonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.82",
                "min_intra_species_ani": "99.65",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.83",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_900187035.1",
                "gtdb_species": "s__Megamonas hypermegale",
                "ani": 81.5635,
                "matched_fragments": 456,
                "total_fragments": 847,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Selenomonadales;f__Selenomonadaceae;g__Megamonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.37",
                "min_intra_species_ani": "97.31",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.84",
                "num_clustered_genomes": 6,
                "status": "-"
            },
            {
                "accession": "GCA_002314325.1",
                "gtdb_species": "s__Megamonas hypermegale_A",
                "ani": 79.3248,
                "matched_fragments": 187,
                "total_fragments": 847,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Selenomonadales;f__Selenomonadaceae;g__Megamonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_900554895.1",
                "gtdb_species": "s__Megamonas gallistercoris",
                "ani": 77.9815,
                "matched_fragments": 190,
                "total_fragments": 847,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Selenomonadales;f__Selenomonadaceae;g__Megamonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.29",
                "min_intra_species_ani": "98.29",
                "mean_intra_species_af": "0.76",
                "min_intra_species_af": "0.76",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_902363205.1",
                "gtdb_species": "s__CABIZH01 sp902363205",
                "ani": 77.3848,
                "matched_fragments": 74,
                "total_fragments": 847,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Selenomonadales;f__Massilibacillaceae;g__CABIZH01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.61",
                "min_intra_species_ani": "97.54",
                "mean_intra_species_af": "0.87",
                "min_intra_species_af": "0.81",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCF_015732155.1",
                "gtdb_species": "s__Pectinatus sottacetonis",
                "ani": 77.0733,
                "matched_fragments": 77,
                "total_fragments": 847,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Selenomonadales;f__Selenomonadaceae;g__Pectinatus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": 0.0,
        "cell_length": 0.875,
        "doubling_h": null,
        "growth_tmp": 37.0,
        "optimum_tmp": 38.25,
        "optimum_ph": 7.0,
        "genome_size": 2533141.0,
        "gc_content": 32.155,
        "coding_genes": 2078.0,
        "rRNA16S_genes": 5.0,
        "tRNA_genes": 55.0,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 0.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 1.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Megamonas",
        "funiformis",
        "YIT",
        "11815"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}