{ "type": "genome", "identifier": "GCF_000248015.1", "organism": "Atlantibacter hermannii NBRC 105704", "title": "Atlantibacter hermannii NBRC 105704", "description": "na", "data type": "Genome sequencing and assembly", "organization": "National Institute of Technology and Evaluation (NITE)", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000248015.1", "bioproject": "PRJNA224116", "biosample": "SAMD00041803", "wgs_master": "BAFF00000000.1", "refseq_category": "na", "taxid": "1115512", "species_taxid": "565", "organism_name": "Atlantibacter hermannii NBRC 105704", "infraspecific_name": "strain=NBRC 105704", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2012/02/18", "asm_name": "ASM24801v2", "asm_submitter": "National Institute of Technology and Evaluation (NITE)", "gbrs_paired_asm": "GCA_000248015.2", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/248/015/GCF_000248015.1_ASM24801v2", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4495280", "genome_size_ungapped": "4495280", "gc_percent": "54.000000", "replicon_count": "0", "scaffold_count": "44", "contig_count": "44", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000248015.1-RS_2024_08_09", "annotation_date": "2024-08-09", "total_gene_count": "4235", "protein_coding_gene_count": "4093", "non_coding_gene_count": "76", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2012-02-18", "dateModified": "2012-02-18", "datePublished": "2012-02-18", "_annotation": { "sample_count": 1, "sample_organism": [ "Atlantibacter hermannii NBRC 105704" ], "sample_taxid": [ "1115512" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "not applicable" ], "sample_host_location_id": [], "data_size": "1.275 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4495280", "Number of Sequences": "44", "Longest Sequences (bp)": "1031318", "N50 (bp)": "253347", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "54.1", "Number of CDSs": "4134", "Average Protein Length": "318.0", "Coding Ratio (%)": "87.7", "Number of rRNAs": "2", "Number of tRNAs": "64", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Atlantibacter hermannii", "strain": "strain=NBRC 105704", "accession": "GCA_000248015.2", "taxid": 565, "species_taxid": 565, 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86.3736, "matched_fragments": 1145, "total_fragments": 1476, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Atlantibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014193285.1", "gtdb_species": "s__Atlantibacter sp002345315", "ani": 86.2624, "matched_fragments": 1196, "total_fragments": 1476, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Atlantibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.54", "min_intra_species_ani": "98.53", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.90", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_011077955.1", "gtdb_species": "s__Atlantibacter sp002358165", "ani": 86.1993, 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"filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Atlantibacter", "hermannii", "NBRC", "105704" ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }