{ "type": "genome", "identifier": "GCF_000248075.1", "organism": "Gordonia otitidis NBRC 100426", "title": "Gordonia otitidis NBRC 100426", "description": "na", "data type": "Genome sequencing and assembly", "organization": "National Institute of Technology and Evaluation (NITE)", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000248075.1", "bioproject": "PRJNA224116", "biosample": "SAMD00041778", "wgs_master": "BAFB00000000.1", "refseq_category": "na", "taxid": "1108044", "species_taxid": "249058", "organism_name": "Gordonia otitidis NBRC 100426", "infraspecific_name": "strain=NBRC 100426", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2012/02/18", "asm_name": "ASM24807v2", "asm_submitter": "National Institute of Technology and Evaluation (NITE)", "gbrs_paired_asm": "GCA_000248075.2", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/248/075/GCF_000248075.1_ASM24807v2", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5295895", "genome_size_ungapped": "5295895", "gc_percent": "65.500000", "replicon_count": "0", "scaffold_count": "273", "contig_count": "273", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000248075.1-RS_2024_09_02", "annotation_date": "2024-09-02", "total_gene_count": "4975", "protein_coding_gene_count": "4743", "non_coding_gene_count": "55", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2012-02-18", "dateModified": "2012-02-18", "datePublished": "2012-02-18", "_annotation": { "sample_count": 1, "sample_organism": [ "Gordonia otitidis NBRC 100426" ], "sample_taxid": [ "1108044" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "not applicable" ], "sample_host_location_id": [], "data_size": "1.466 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5293733", "Number of Sequences": "257", "Longest Sequences (bp)": "152597", "N50 (bp)": "41328", "Gap Ratio (%)": "0.000019", "GCcontent (%)": "65.4", "Number of CDSs": "4639", "Average Protein Length": "322.8", "Coding Ratio (%)": "84.9", "Number of rRNAs": "3", "Number of tRNAs": "51", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Gordonia otitidis", "strain": "strain=NBRC 100426", "accession": "GCA_000248075.2", "taxid": 249058, "species_taxid": 249058, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1638, "total_fragments": 1648, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Gordonia aichiensis", "strain": "strain=NBRC 108223", "accession": "GCA_000332975.1", "taxid": 36820, "species_taxid": 36820, "relation_to_type": "type", "validated": true, "ani": 87.5252, "matched_fragments": 1273, "total_fragments": 1648, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gordonia sputi", "strain": "strain=ATCC 29627", "accession": "GCA_012396255.1", "taxid": 36823, "species_taxid": 36823, "relation_to_type": "type", "validated": true, "ani": 84.02, "matched_fragments": 1160, "total_fragments": 1648, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gordonia sputi", "strain": "strain=NBRC 100414", "accession": "GCA_000248055.2", "taxid": 36823, "species_taxid": 36823, "relation_to_type": "type", "validated": true, "ani": 83.9559, "matched_fragments": 1133, "total_fragments": 1648, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gordonia desulfuricans", "strain": "strain=213E", "accession": "GCA_010119475.1", "taxid": 89051, "species_taxid": 89051, "relation_to_type": "type", "validated": true, "ani": 79.6912, "matched_fragments": 684, "total_fragments": 1648, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gordonia alkanivorans", "strain": "strain=NBRC 16433", "accession": "GCA_000225505.1", "taxid": 84096, "species_taxid": 84096, "relation_to_type": "type", "validated": true, "ani": 79.6552, "matched_fragments": 619, "total_fragments": 1648, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gordonia rubripertincta", "strain": "strain=NBRC 101908", "accession": "GCA_000327325.1", "taxid": 36822, "species_taxid": 36822, "relation_to_type": "type", "validated": true, "ani": 79.5287, "matched_fragments": 636, "total_fragments": 1648, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gordonia terrae", "strain": "strain=NRRL B-16283", "accession": "GCA_003183825.1", "taxid": 2055, "species_taxid": 2055, "relation_to_type": "suspected-type", "validated": true, "ani": 79.4498, "matched_fragments": 625, "total_fragments": 1648, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gordonia namibiensis", "strain": "strain=NBRC 108229", "accession": "GCA_000298235.1", "taxid": 168480, "species_taxid": 168480, "relation_to_type": "type", "validated": true, "ani": 79.345, "matched_fragments": 647, "total_fragments": 1648, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gordonia insulae", "strain": "strain=MMS17-SY073", "accession": "GCA_003855095.1", "taxid": 2420509, "species_taxid": 2420509, "relation_to_type": "type", "validated": true, "ani": 79.2611, "matched_fragments": 681, "total_fragments": 1648, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gordonia mangrovi", "strain": "strain=HNM0687", "accession": "GCA_009828195.1", "taxid": 2665643, "species_taxid": 2665643, "relation_to_type": "type", "validated": true, "ani": 79.0256, "matched_fragments": 625, "total_fragments": 1648, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gordonia hankookensis", "strain": "strain=ON-33", "accession": "GCA_014673215.1", "taxid": 589403, "species_taxid": 589403, "relation_to_type": "type", "validated": true, "ani": 78.8355, "matched_fragments": 643, "total_fragments": 1648, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000248075.1", "gtdb_species": "s__Gordonia otitidis", "ani": 100.0, "matched_fragments": 1638, "total_fragments": 1648, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Gordonia", 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