{ "type": "genome", "identifier": "GCF_000248135.1", "organism": "Acinetobacter ursingii DSM 16037 = CIP 107286", "title": "Acinetobacter ursingii DSM 16037 = CIP 107286", "description": "na", "data type": "Genome sequencing and assembly", "organization": "University of Birmingham", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000248135.1", "bioproject": "PRJNA224116", "biosample": "SAMN02471602", "wgs_master": "AIEA00000000.1", "refseq_category": "na", "taxid": "981336", "species_taxid": "108980", "organism_name": "Acinetobacter ursingii DSM 16037 = CIP 107286", "infraspecific_name": "strain=DSM 16037", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2012/02/21", "asm_name": "ASM24813v2", "asm_submitter": "University of Birmingham", "gbrs_paired_asm": "GCA_000248135.2", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/248/135/GCF_000248135.1_ASM24813v2", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3568421", "genome_size_ungapped": "3568421", "gc_percent": "40.000000", "replicon_count": "0", "scaffold_count": "145", "contig_count": "145", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000248135.1-RS_2024_04_16", "annotation_date": "2024-04-16", "total_gene_count": "3490", "protein_coding_gene_count": "3145", "non_coding_gene_count": "76", "pubmed_id": "23259572" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2012-02-21", "dateModified": "2012-02-21", "datePublished": "2012-02-21", "_annotation": { "sample_count": 1, "sample_organism": [ "Acinetobacter ursingii DSM 16037 = CIP 107286" ], "sample_taxid": [ "981336" ], "sample_host_organism": [ "Homo sapiens" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Czech Republic" ], "sample_host_location_id": [], "data_size": "1.014 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.38, "strain_heterogeneity": 100.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3568421", "Number of Sequences": "145", "Longest Sequences (bp)": "363110", "N50 (bp)": "105740", "Gap Ratio (%)": "0.000196", "GCcontent (%)": "40.0", "Number of CDSs": "3361", "Average Protein Length": "301.6", "Coding Ratio (%)": "85.2", "Number of rRNAs": "7", "Number of tRNAs": "63", "Number of CRISPRs": "17" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Acinetobacter ursingii", "strain": "strain=FDAARGOS_1095", "accession": "GCA_016726205.1", "taxid": 108980, "species_taxid": 108980, "relation_to_type": "type", "validated": true, "ani": 99.9893, "matched_fragments": 1131, "total_fragments": 1135, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Acinetobacter ursingii", "strain": "strain=CIP 107286", "accession": "GCA_000368825.1", "taxid": 108980, "species_taxid": 108980, "relation_to_type": "type", "validated": true, "ani": 99.9814, "matched_fragments": 1106, "total_fragments": 1135, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Acinetobacter septicus", "strain": "strain=FDAARGOS_1401", "accession": "GCA_019355975.1", "taxid": 465797, "species_taxid": 465797, "relation_to_type": "type", "validated": true, "ani": 97.5863, "matched_fragments": 1013, "total_fragments": 1135, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Acinetobacter guerrae", "strain": "strain=AC 1271", "accession": "GCA_009372255.1", "taxid": 1843371, "species_taxid": 1843371, "relation_to_type": "type", "validated": true, "ani": 88.5754, "matched_fragments": 892, "total_fragments": 1135, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter ihumii", "strain": "strain=Marseille-P8049", "accession": "GCA_900625095.1", "taxid": 2483802, "species_taxid": 2483802, "relation_to_type": "type", "validated": true, "ani": 84.7118, "matched_fragments": 820, "total_fragments": 1135, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter pittii", "strain": "strain=CIP70.29", "accession": "GCA_024390955.1", "taxid": 48296, "species_taxid": 48296, "relation_to_type": "type", "validated": true, "ani": 79.6475, "matched_fragments": 440, "total_fragments": 1135, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter johnsonii", "strain": "strain=NCTC10308", "accession": "GCA_900444855.1", "taxid": 40214, "species_taxid": 40214, "relation_to_type": "suspected-type", "validated": true, "ani": 79.5553, "matched_fragments": 392, "total_fragments": 1135, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter haemolyticus", "strain": "strain=NCTC10305", "accession": "GCA_900444835.1", "taxid": 29430, "species_taxid": 29430, "relation_to_type": "type", "validated": true, "ani": 79.1387, "matched_fragments": 400, "total_fragments": 1135, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.38, "strain_heterogeneity": 100.0 }, "gtdb_result": [ { "accession": "GCF_000368825.1", "gtdb_species": "s__Acinetobacter ursingii", "ani": 99.9814, "matched_fragments": 1106, "total_fragments": 1135, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.69", "min_intra_species_ani": "96.95", "mean_intra_species_af": "0.88", "min_intra_species_af": "0.80", "num_clustered_genomes": 69, "status": "conclusive" }, { "accession": "GCF_009372255.1", "gtdb_species": "s__Acinetobacter guerrae", "ani": 88.5509, "matched_fragments": 894, "total_fragments": 1135, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.44", "min_intra_species_ani": "98.41", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.89", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_016624945.1", "gtdb_species": "s__Acinetobacter sp016624945", "ani": 85.122, "matched_fragments": 838, "total_fragments": 1135, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.57", "min_intra_species_ani": "99.14", "mean_intra_species_af": "0.97", "min_intra_species_af": "0.94", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_900625095.1", "gtdb_species": "s__Acinetobacter sp900625095", "ani": 84.7186, "matched_fragments": 820, "total_fragments": 1135, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000368685.1", "gtdb_species": "s__Acinetobacter baylyi", "ani": 80.578, "matched_fragments": 527, "total_fragments": 1135, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.85", "min_intra_species_ani": "98.65", "mean_intra_species_af": "0.98", "min_intra_species_af": "0.93", "num_clustered_genomes": 13, "status": "-" }, { "accession": "GCF_000760595.1", "gtdb_species": "s__Acinetobacter soli", "ani": 79.7253, "matched_fragments": 457, "total_fragments": 1135, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.45", "min_intra_species_ani": "98.17", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.88", "num_clustered_genomes": 38, "status": "-" }, { "accession": "GCF_008993995.1", "gtdb_species": "s__Acinetobacter brisouii_A", "ani": 79.6768, "matched_fragments": 333, "total_fragments": 1135, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.99", "min_intra_species_ani": "97.99", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.89", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_000369645.1", "gtdb_species": "s__Acinetobacter sp000369645", "ani": 79.6014, "matched_fragments": 426, "total_fragments": 1135, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.86", "min_intra_species_ani": "98.16", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.84", "num_clustered_genomes": 9, "status": "-" }, { "accession": "GCF_002135235.1", "gtdb_species": "s__Acinetobacter sp002135235", "ani": 78.8982, "matched_fragments": 345, "total_fragments": 1135, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_013004375.1", "gtdb_species": "s__Acinetobacter terrae", "ani": 78.7663, "matched_fragments": 384, "total_fragments": 1135, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.86", "min_intra_species_ani": "96.05", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.88", "num_clustered_genomes": 8, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.019, "cell_length": 0.052, "doubling_h": -0.144, "growth_tmp": 30.0, "optimum_tmp": 29.638, "optimum_ph": 7.1, "genome_size": 3421178.875, "gc_content": 39.987, "coding_genes": 3356.54, "rRNA16S_genes": 6.191, "tRNA_genes": 76.716, "gram_stain": 0.0, "sporulation": 0.0, "motility": 0.0, "range_salinity": 0.5, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Acinetobacter", "ursingii", "DSM", "16037", "=", "CIP", "107286" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }