{ "type": "genome", "identifier": "GCF_000248155.1", "organism": "Acinetobacter parvus DSM 16617 = CIP 108168", "title": "Acinetobacter parvus DSM 16617 = CIP 108168", "description": "na", "data type": "Genome sequencing and assembly", "organization": "University of Birmingham", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000248155.1", "bioproject": "PRJNA224116", "biosample": "SAMN02471588", "wgs_master": "AIEB00000000.1", "refseq_category": "na", "taxid": "981333", "species_taxid": "134533", "organism_name": "Acinetobacter parvus DSM 16617 = CIP 108168", "infraspecific_name": "strain=DSM 16617", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2012/02/21", "asm_name": "ASM24815v2", "asm_submitter": "University of Birmingham", "gbrs_paired_asm": "GCA_000248155.2", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/248/155/GCF_000248155.1_ASM24815v2", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2878042", "genome_size_ungapped": "2878042", "gc_percent": "41.500000", "replicon_count": "0", "scaffold_count": "225", "contig_count": "225", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000248155.1-RS_2024_07_24", "annotation_date": "2024-07-24", "total_gene_count": "3034", "protein_coding_gene_count": "2507", "non_coding_gene_count": "89", "pubmed_id": "23259572" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2012-02-21", "dateModified": "2012-02-21", "datePublished": "2012-02-21", "_annotation": { "sample_count": 1, "sample_organism": [ "Acinetobacter parvus DSM 16617 = CIP 108168" ], "sample_taxid": [ "981333" ], "sample_host_organism": [ "Homo sapiens" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Czech Republic" ], "sample_host_location_id": [], "data_size": "0.819 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2878042", "Number of Sequences": "225", "Longest Sequences (bp)": "119396", "N50 (bp)": "35316", "Gap Ratio (%)": "0.000556", "GCcontent (%)": "41.6", "Number of CDSs": "2780", "Average Protein Length": "286.2", "Coding Ratio (%)": "82.9", "Number of rRNAs": "9", "Number of tRNAs": "64", "Number of CRISPRs": "7" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Acinetobacter parvus", "strain": "strain=DSM 16617", "accession": "GCA_000248155.2", 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603, "total_fragments": 869, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter colistiniresistens", "strain": "strain=NIPH 2036", "accession": "GCA_000413935.1", "taxid": 280145, "species_taxid": 280145, "relation_to_type": "type", "validated": true, "ani": 83.2928, "matched_fragments": 637, "total_fragments": 869, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter vivianii", "strain": "strain=CCM 8642", "accession": "GCA_014635885.1", "taxid": 1776742, "species_taxid": 1776742, "relation_to_type": "type", "validated": true, "ani": 83.2774, "matched_fragments": 590, "total_fragments": 869, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter gyllenbergii", "strain": "strain=MTCC 11365", "accession": "GCA_000414075.1", "taxid": 134534, "species_taxid": 134534, "relation_to_type": "type", "validated": true, "ani": 83.1895, "matched_fragments": 617, "total_fragments": 869, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter courvalinii", "strain": "strain=CCUG 67960", "accession": "GCA_008802255.1", "taxid": 280147, "species_taxid": 280147, "relation_to_type": "type", "validated": true, "ani": 83.1165, "matched_fragments": 587, "total_fragments": 869, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter haemolyticus", "strain": "strain=CIP 64.3", "accession": "GCA_000369065.1", "taxid": 29430, "species_taxid": 29430, "relation_to_type": "type", "validated": true, "ani": 83.0092, "matched_fragments": 549, "total_fragments": 869, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter haemolyticus", "strain": "strain=NCTC10305", "accession": "GCA_900444835.1", "taxid": 29430, "species_taxid": 29430, "relation_to_type": "type", "validated": true, "ani": 82.9959, "matched_fragments": 557, "total_fragments": 869, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter haemolyticus", "strain": "strain=FDAARGOS_1392", "accession": "GCA_019355995.1", "taxid": 29430, "species_taxid": 29430, "relation_to_type": "type", "validated": true, "ani": 82.9347, "matched_fragments": 552, "total_fragments": 869, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter courvalinii", "strain": "strain=CCM 8635", "accession": "GCA_014635545.1", "taxid": 280147, "species_taxid": 280147, "relation_to_type": "type", "validated": true, "ani": 82.9102, "matched_fragments": 594, "total_fragments": 869, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter haemolyticus", "strain": "strain=MTCC 9819", "accession": "GCA_000430205.1", "taxid": 29430, "species_taxid": 29430, "relation_to_type": "type", "validated": true, "ani": 82.8723, "matched_fragments": 538, "total_fragments": 869, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter pittii", "strain": "strain=CIP70.29", "accession": "GCA_024390955.1", "taxid": 48296, "species_taxid": 48296, "relation_to_type": "type", "validated": true, "ani": 80.5321, "matched_fragments": 362, "total_fragments": 869, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter baumannii", "strain": "strain=PartI-Abaumannii-RM8376", "accession": "GCA_022870045.1", "taxid": 470, "species_taxid": 470, "relation_to_type": "type", "validated": true, "ani": 79.9619, "matched_fragments": 378, "total_fragments": 869, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter baumannii", "strain": "strain=ATCC 19606", "accession": "GCA_020911985.1", "taxid": 470, "species_taxid": 470, "relation_to_type": "type", "validated": true, "ani": 79.9551, "matched_fragments": 382, "total_fragments": 869, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, 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