{ "type": "genome", "identifier": "GCF_000252995.1", "organism": "Salmonella bongori NCTC 12419", "title": "Salmonella bongori NCTC 12419", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Sanger Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000252995.1", "bioproject": "PRJNA224116", "biosample": "SAMEA3138409", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "218493", "species_taxid": "54736", "organism_name": "Salmonella bongori NCTC 12419", "infraspecific_name": "strain=NCTC 12419", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2011/07/06", "asm_name": "ASM25299v1", "asm_submitter": "Sanger Institute", "gbrs_paired_asm": "GCA_000252995.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/252/995/GCF_000252995.1_ASM25299v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4460105", "genome_size_ungapped": "4460105", "gc_percent": "51.500000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000252995.1-RS_2024_12_09", "annotation_date": "2024-12-09", "total_gene_count": "4226", "protein_coding_gene_count": "3978", "non_coding_gene_count": "117", "pubmed_id": "21876672" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2011-07-06", "dateModified": "2011-07-06", "datePublished": "2011-07-06", "_annotation": { "sample_count": 1, "sample_organism": [ "Salmonella bongori NCTC 12419" ], "sample_taxid": [ "218493" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [], "sample_host_location_id": [], "data_size": "1.266 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4460105", "Number of Sequences": "1", "Longest Sequences (bp)": "4460105", "N50 (bp)": "4460105", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "51.3", "Number of CDSs": "4045", "Average Protein Length": "318.3", "Coding Ratio (%)": "86.6", "Number of rRNAs": "22", "Number of tRNAs": "84", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Salmonella bongori", "strain": "strain=NCTC 12419", "accession": "GCA_000252995.1", "taxid": 54736, "species_taxid": 54736, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1486, "total_fragments": 1486, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Salmonella enterica subsp. enterica", "strain": "strain=PartC-Senterica-RM8376", "accession": "GCA_022869965.1", "taxid": 59201, "species_taxid": 28901, "relation_to_type": "suspected-type", "validated": true, "ani": 90.1434, "matched_fragments": 1249, "total_fragments": 1486, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Salmonella enterica subsp. salamae", "strain": "strain=CCUG 30039T", "accession": "GCA_008692775.1", "taxid": 59202, "species_taxid": 28901, "relation_to_type": "type", "validated": true, "ani": 90.1332, "matched_fragments": 1282, "total_fragments": 1486, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Salmonella enterica", "strain": "strain=FDAARGOS_768", "accession": "GCA_006365335.1", "taxid": 28901, "species_taxid": 28901, "relation_to_type": "type", "validated": true, "ani": 90.132, "matched_fragments": 1258, "total_fragments": 1486, "ani_threshold": 95, "status": 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