# locus_id	locus_tag	location	classification	internal_stop	indel	ref_id	description	query_cov	ref_cov	identity
MGA_18	LOCUS_00180	sequence1:15067..15441(+)	frameshift		15402	WP_034455038.1	IS110 family transposase	91.9	34.1	85.1
MGA_19	LOCUS_00190	sequence1:15438..16058(+)	frameshift		15402	WP_011816173.1	IS110-like element IS1328 family transposase	100.0	61.7	76.2
MGA_20	LOCUS_00200	sequence1:16475..16696(+)	frameshift,internal_stop_codon	16764..16766(+),16677..16679(+)	16648	WP_103677063.1	KilA-N domain-containing protein	87.7	36.4	89.1
MGA_22	LOCUS_00220	sequence1:18041..18856(+)	frameshift		18715	WP_005173543.1	IS1182-like element ISYen4 family transposase	63.5	35.2	89.5
MGA_40	LOCUS_00400	sequence1:37436..37813(-)	frameshift		37836	WP_011816033.1	IS110-like element ISYen1 family transposase	100.0	36.9	98.4
MGA_41	LOCUS_00410	sequence1:37810..38454(-)	frameshift		37839	WP_011816205.1	IS110-like element ISYen1 family transposase	97.7	61.7	97.6
MGA_42	LOCUS_00420	sequence1:38890..39270(-)	frameshift		39340	WP_011815834.1	LysR family transcriptional regulator	91.3	38.3	93.0
MGA_43	LOCUS_00430	sequence1:39239..39631(-)	frameshift		39340	WP_011815834.1	LysR family transcriptional regulator	75.4	32.7	95.9
MGA_50	LOCUS_00500	sequence1:44860..45093(-)	frameshift		45127	WP_011815832.1	IS110-like element ISYen1 family transposase	100.0	22.7	97.4
MGA_51	LOCUS_00510	sequence1:45101..45862(-)	frameshift		45127	WP_011815821.1	IS110-like element ISYen1 family transposase	97.2	72.6	98.4
MGA_63	LOCUS_00630	sequence1:57854..59023(-)	internal_stop_codon	59051..59053(-)		WP_050129821.1	MacB family efflux pump subunit	100.0	58.9	91.8
MGA_64	LOCUS_00640	sequence1:59051..59836(-)	internal_stop_codon	59051..59053(-)		WP_050129821.1	MacB family efflux pump subunit	100.0	39.5	95.4
MGA_66	LOCUS_00660	sequence1:61237..61467(+)	frameshift		61440	WP_005172242.1	response regulator transcription factor	92.1	30.8	98.6
MGA_67	LOCUS_00670	sequence1:61461..61919(+)	frameshift		61443	WP_005172242.1	response regulator transcription factor	100.0	67.0	96.1
MGA_111	LOCUS_01110	sequence1:112507..112689(-)	internal_stop_codon	112801..112803(-)		WP_011815888.1	MerR family transcriptional regulator	100.0	22.7	98.3
MGA_112	LOCUS_01120	sequence1:112656..113147(-)	partial			WP_011815889.1	alpha/beta hydrolase	84.0	44.5	94.2
MGA_114	LOCUS_01140	sequence1:114054..114269(+)	frameshift		114230	WP_005172052.1	YceI family protein	94.4	34.9	88.1
MGA_115	LOCUS_01150	sequence1:114266..114631(+)	frameshift		114230	WP_005172052.1	YceI family protein	100.0	63.0	98.3
MGA_134	LOCUS_01340	sequence1:132942..133166(+)	partial			WP_005171954.1	YfcZ/YiiS family protein	100.0	71.8	98.6
MGA_147	LOCUS_01470	sequence1:147903..148685(+)	frameshift		148673	WP_011815910.1	sensor domain-containing diguanylate cyclase	99.6	77.3	93.4
MGA_148	LOCUS_01480	sequence1:148690..148911(+)	frameshift		148673	WP_011815910.1	sensor domain-containing diguanylate cyclase	100.0	21.8	91.8
MGA_180	LOCUS_01800	sequence1:183351..188234(+)	frameshift		188228	WP_011815928.1	RTX-family protein	99.9	77.2	92.0
MGA_181	LOCUS_01810	sequence1:188212..189678(+)	frameshift		188228	WP_011815928.1	RTX-family protein	99.6	23.0	94.9
MGA_186	LOCUS_01860	sequence1:193646..193879(-)	frameshift		193913	WP_011815832.1	IS110-like element ISYen1 family transposase	100.0	22.7	97.4
MGA_187	LOCUS_01870	sequence1:193887..194648(-)	frameshift		193913	WP_011815821.1	IS110-like element ISYen1 family transposase	97.2	72.6	98.0
MGA_221	LOCUS_02210	sequence1:234783..235304(+)	frameshift		235259	WP_050298359.1	2-hydroxyacid dehydrogenase	92.5	49.8	96.9
MGA_222	LOCUS_02220	sequence1:235246..235749(+)	frameshift		235262	WP_050298359.1	2-hydroxyacid dehydrogenase	95.2	49.5	99.4
MGA_240	LOCUS_02400	sequence1:256181..260023(+)	internal_stop_codon	260021..260023(+)		WP_011815969.1	S8 family serine peptidase	100.0	71.0	76.9
MGA_241	LOCUS_02410	sequence1:260099..261604(+)	internal_stop_codon	260021..260023(+)		WP_011815969.1	S8 family serine peptidase	97.4	26.9	77.9
MGA_252	LOCUS_02520	sequence1:279263..279583(+)	frameshift		279577	WP_086528237.1	HlyD family efflux transporter periplasmic adaptor subunit	80.2	21.9	61.2
MGA_253	LOCUS_02530	sequence1:279720..280109(+)	frameshift		279580	WP_014208471.1	HlyD family efflux transporter periplasmic adaptor subunit	100.0	33.2	65.9
MGA_262	LOCUS_02620	sequence1:291437..291796(+)	partial			WP_050298350.1	antiterminator Q family protein	73.1	54.1	80.5
MGA_264	LOCUS_02640	sequence1:292103..292474(+)	partial			WP_002208858.1	ATP-binding protein	94.3	56.6	82.8
MGA_268	LOCUS_02680	sequence1:296813..297307(+)	partial			WP_013094853.1	carbonic anhydrase family protein	91.5	61.7	46.0
MGA_301	LOCUS_03010	sequence1:334368..335051(+)	frameshift		335015	WP_005171384.1	PTS fructose transporter subunit IIBC	95.6	39.0	87.2
MGA_302	LOCUS_03020	sequence1:335066..336046(+)	frameshift		335018	WP_005171384.1	PTS fructose transporter subunit IIBC	99.7	57.9	98.5
MGA_306	LOCUS_03060	sequence1:338338..338802(+)	frameshift		338778	WP_011816002.1	fimbrial polyadhesin assembly chaperone MyfB	95.5	55.1	97.3
MGA_307	LOCUS_03070	sequence1:338829..339140(+)	frameshift		338775	WP_011816002.1	fimbrial polyadhesin assembly chaperone MyfB	100.0	38.6	96.1
MGA_383	LOCUS_03830	sequence1:433528..433938(-)	frameshift		433928,433980	WP_011816033.1	IS110-like element ISYen1 family transposase	98.5	39.5	98.5
MGA_384	LOCUS_03840	sequence1:433942..434547(-)	frameshift		433931,433980	WP_011816205.1	IS110-like element ISYen1 family transposase	94.0	55.8	98.9
MGA_386	LOCUS_03860	sequence1:436696..437064(+)	frameshift		436974	WP_005171031.1	L-asparaginase 2	77.9	27.5	93.7
MGA_387	LOCUS_03870	sequence1:436956..437732(+)	frameshift		436977	WP_005171031.1	L-asparaginase 2	99.2	74.2	98.0
MGA_432	LOCUS_04320	sequence1:496637..496996(+)	frameshift		496975	WP_005170872.1	TfoX/Sxy family DNA transformation protein	97.5	55.0	96.6
MGA_433	LOCUS_04330	sequence1:496993..497271(+)	frameshift		496978	WP_005170872.1	TfoX/Sxy family DNA transformation protein	100.0	43.6	93.5
MGA_456	LOCUS_04560	sequence1:517910..518281(+)	frameshift		518272	WP_005170821.1	DMT family transporter	100.0	39.7	97.6
MGA_457	LOCUS_04570	sequence1:518259..518843(+)	frameshift		518272	WP_005170821.1	DMT family transporter	97.4	61.0	88.4
MGA_466	LOCUS_04660	sequence1:532564..533397(-)	frameshift		532577,533387	WP_011816067.1	multidrug efflux MFS transporter MdtG	96.4	64.5	99.3
MGA_467	LOCUS_04670	sequence1:533328..533711(-)	frameshift		533387	WP_011816067.1	multidrug efflux MFS transporter MdtG	85.0	26.1	96.3
MGA_469	LOCUS_04690	sequence1:535059..537962(-)	partial			WP_002210083.1	RHS repeat protein	73.5	73.4	46.9
MGA_534	LOCUS_05340	sequence1:609872..610192(-)	internal_stop_codon	610220..610222(-)		WP_005173543.1	IS1182-like element ISYen4 family transposase	100.0	21.7	73.6
MGA_536	LOCUS_05360	sequence1:610651..610986(-)	internal_stop_codon	610670..610672(-)		WP_005173543.1	IS1182-like element ISYen4 family transposase	64.9	14.7	91.7
MGA_537	LOCUS_05370	sequence1:611103..611801(+)	partial			WP_001118118.1	hypothetical protein	63.8	59.6	58.0
MGA_538	LOCUS_05380	sequence1:611935..612333(+)	frameshift		612330	WP_011815235.1	IS256 family transposase	72.0	26.5	39.6
MGA_540	LOCUS_05400	sequence1:614241..614405(+)	partial			WP_002210910.1	NADP-dependent isocitrate dehydrogenase	100.0	12.9	96.3
MGA_581	LOCUS_05810	sequence1:651904..652737(+)	frameshift		652722	WP_011816161.1	peptidoglycan glycosyltransferase FtsI	99.6	48.5	96.7
MGA_582	LOCUS_05820	sequence1:652817..653614(+)	frameshift		652722	WP_011816161.1	peptidoglycan glycosyltransferase FtsI	100.0	46.6	99.2
MGA_615	LOCUS_06150	sequence1:688729..689946(-)	partial			WP_001390260.1	phage tail tape measure protein	69.4	31.4	33.0
MGA_616	LOCUS_06160	sequence1:690143..690502(+)	partial			WP_150100254.1	IS3-like element ISD1 family transposase	96.6	31.1	53.0
MGA_620	LOCUS_06200	sequence1:694134..694349(+)	frameshift		694337,694380	WP_011815235.1	IS256 family transposase	95.8	17.0	91.2
MGA_621	LOCUS_06210	sequence1:694395..695336(+)	frameshift		694337,694380	WP_011815235.1	IS256 family transposase	100.0	78.2	94.6
MGA_635	LOCUS_06350	sequence1:713577..714068(+)	frameshift		714038	WP_005168943.1	aldolase	95.1	74.9	96.8
MGA_644	LOCUS_06440	sequence1:724307..724492(+)	frameshift		724325	WP_011816576.1	ABC transporter permease	95.1	13.5	94.8
MGA_654	LOCUS_06540	sequence1:732748..733854(+)	frameshift		733833	WP_011816569.1	poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA	98.4	44.0	98.1
MGA_655	LOCUS_06550	sequence1:733851..735191(+)	frameshift		733833	WP_011816569.1	poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA	100.0	54.3	99.3
MGA_665	LOCUS_06650	sequence1:746892..747107(+)	frameshift		746838	WP_034455038.1	IS110 family transposase	93.0	19.8	83.3
MGA_666	LOCUS_06660	sequence1:747111..747410(+)	frameshift		746838,747407	WP_000427614.1	IS110-like element IS5075 family transposase	97.0	28.7	71.9
MGA_667	LOCUS_06670	sequence1:747993..748190(-)	partial			WP_011816194.1	DMT family transporter	100.0	23.1	100.0
MGA_695	LOCUS_06950	sequence1:778461..778694(-)	frameshift		778640,778743,778680,778761,778491,778621	WP_011816205.1	IS110-like element ISYen1 family transposase	58.4	13.3	91.1
MGA_696	LOCUS_06960	sequence1:778597..779358(-)	frameshift		778640,778743,778680,778761,778491,778621	WP_011816205.1	IS110-like element ISYen1 family transposase	97.2	72.6	85.9
MGA_697	LOCUS_06970	sequence1:779560..780234(-)	partial			WP_046050999.1	L-cystine transporter	99.1	47.9	95.5
MGA_730	LOCUS_07300	sequence1:812030..812380(+)	partial			WP_011816226.1	translation initiation factor IF-3	100.0	63.4	89.7
MGA_794	LOCUS_07940	sequence1:885729..886004(-)	partial			WP_004706625.1	DUF3811 domain-containing protein	73.6	77.0	98.5
MGA_815	LOCUS_08150	sequence1:906404..906715(-)	partial			WP_005169553.1	RES family NAD+ phosphorylase	100.0	67.8	93.2
MGA_816	LOCUS_08160	sequence1:906681..906851(-)	partial			WP_005169556.1	type II toxin-antitoxin system antitoxin Xre	73.2	27.7	100.0
MGA_825	LOCUS_08250	sequence1:916238..916885(-)	partial			WP_000066288.1	phosphatidylinositol diacylglycerol-lyase	85.1	56.8	36.8
MGA_840	LOCUS_08400	sequence1:935430..936014(-)	partial			WP_046050942.1	carboxypeptidase M32	100.0	39.4	97.9
MGA_857	LOCUS_08570	sequence1:954110..954967(+)	frameshift		954832	WP_011816331.1	L-fucose:H+ symporter permease	84.9	54.6	96.3
MGA_858	LOCUS_08580	sequence1:954885..955136(+)	frameshift		954835	WP_011816331.1	L-fucose:H+ symporter permease	90.4	16.9	100.0
MGA_859	LOCUS_08590	sequence1:955089..955256(-)	partial			WP_011816329.1	hypothetical protein	94.5	20.1	98.1
MGA_868	LOCUS_08680	sequence1:968683..969237(-)	partial			WP_046050931.1	SrfA family protein	100.0	43.0	90.6
MGA_869	LOCUS_08690	sequence1:970165..970485(-)	frameshift		970594,970546,970429,970534	WP_011816033.1	IS110-like element ISYen1 family transposase	98.1	30.7	86.5
MGA_870	LOCUS_08700	sequence1:970577..971164(-)	frameshift		970594,970549,970534,970429	WP_011816205.1	IS110-like element ISYen1 family transposase	97.9	56.3	98.4
MGA_874	LOCUS_08740	sequence1:975078..975374(+)	frameshift		975311	WP_005169715.1	AMP nucleosidase	80.6	16.3	97.5
MGA_875	LOCUS_08750	sequence1:975413..976537(+)	frameshift		975314	WP_005169715.1	AMP nucleosidase	100.0	77.0	98.7
MGA_877	LOCUS_08770	sequence1:976919..977449(-)	partial			WP_001104341.1	Fic family protein	99.4	48.9	73.7
MGA_882	LOCUS_08820	sequence1:981398..981676(+)	partial			WP_005169737.1	ABC transporter substrate-binding protein	56.5	20.2	96.2
MGA_883	LOCUS_08830	sequence1:981616..981888(+)	partial			WP_011816314.1	ABC transporter permease subunit	82.2	32.2	100.0
MGA_907	LOCUS_09070	sequence1:1002387..1002725(-)	partial			WP_000467041.1	DUF2523 domain-containing protein	66.1	77.9	51.4
MGA_912	LOCUS_09120	sequence1:1004273..1004395(+)	partial			WP_005169775.1	DUF1471 family periplasmic protein YahO	100.0	43.5	97.5
MGA_913	LOCUS_09130	sequence1:1004625..1004873(+)	internal_stop_codon	1004871..1004873(+)		WP_050298165.1	MFS transporter	41.5	6.9	82.4
MGA_916	LOCUS_09160	sequence1:1006236..1006454(-)	partial			WP_002211654.1	peptidase	86.1	11.8	53.2
MGA_934	LOCUS_09340	sequence1:1024850..1025260(-)	partial			WP_005169835.1	Mal regulon transcriptional regulator MalI	100.0	39.7	94.1
MGA_935	LOCUS_09350	sequence1:1025312..1026016(+)	partial			WP_011816293.1	maltose/glucose-specific PTS transporter subunit IIBC	99.1	43.3	98.3
MGA_941	LOCUS_09410	sequence1:1032004..1032684(-)	frameshift		1032668	WP_032813714.1	L-arabinose ABC transporter permease AraH	96.9	63.8	99.5
MGA_942	LOCUS_09420	sequence1:1032636..1033061(-)	frameshift		1032674	WP_032813714.1	L-arabinose ABC transporter permease AraH	86.5	35.6	91.0
MGA_949	LOCUS_09490	sequence1:1042996..1043181(-)	frameshift		1042998	WP_011816284.1	type I secretion system permease/ATPase	100.0	8.6	91.8
MGA_950	LOCUS_09500	sequence1:1043184..1043657(-)	partial			WP_011816283.1	HlyD family type I secretion periplasmic adaptor subunit	100.0	33.8	96.8
MGA_966	LOCUS_09660	sequence1:1059801..1060178(-)	frameshift		1060321,1060188,1060221	WP_011816033.1	IS110-like element ISYen1 family transposase	100.0	36.9	96.8
MGA_967	LOCUS_09670	sequence1:1060313..1060819(-)	frameshift		1060321,1060188,1060221	WP_011815832.1	IS110-like element ISYen1 family transposase	98.8	49.0	98.8
MGA_977	LOCUS_09770	sequence1:1072710..1072943(-)	frameshift		1072977	WP_011816033.1	IS110-like element ISYen1 family transposase	100.0	22.7	96.1
MGA_978	LOCUS_09780	sequence1:1072951..1073712(-)	frameshift		1072977	WP_011815821.1	IS110-like element ISYen1 family transposase	97.2	72.6	97.6
MGA_982	LOCUS_09820	sequence1:1075648..1076319(-)	internal_stop_codon	1076350..1076352(-)		WP_011816265.1	benzoate/H(+) symporter BenE family transporter	100.0	55.8	93.7
MGA_983	LOCUS_09830	sequence1:1076350..1076850(-)	internal_stop_codon	1076350..1076352(-)		WP_011816265.1	benzoate/H(+) symporter BenE family transporter	100.0	41.5	92.2
MGA_1017	LOCUS_10170	sequence1:1110707..1111351(-)	partial			WP_011816415.1	TonB system transport protein TonB	63.1	53.4	99.3
MGA_1019	LOCUS_10190	sequence1:1112080..1112340(+)	partial			WP_011461513.1	zf-TFIIB domain-containing protein	40.7	33.3	68.6
MGA_1036	LOCUS_10360	sequence1:1133056..1133535(-)	internal_stop_codon	1133608..1133610(-)		WP_005169304.1	two-component system response regulator RssB	100.0	47.0	99.4
MGA_1037	LOCUS_10370	sequence1:1133608..1134072(-)	internal_stop_codon	1133608..1133610(-)		WP_005169304.1	two-component system response regulator RssB	100.0	45.6	100.0
MGA_1039	LOCUS_10390	sequence1:1135458..1135823(+)	frameshift		1135763,1135414	WP_011816422.1	GNAT family N-acetyltransferase	86.0	76.5	84.6
MGA_1042	LOCUS_10420	sequence1:1138408..1138815(-)	frameshift		1138928	WP_005169293.1	LysR family transcriptional regulator YtxR	100.0	47.2	100.0
MGA_1043	LOCUS_10430	sequence1:1138908..1139237(-)	frameshift		1138928	WP_005169293.1	LysR family transcriptional regulator YtxR	94.5	36.0	100.0
MGA_1052	LOCUS_10520	sequence1:1149632..1150276(+)	frameshift		1150246	WP_011816205.1	IS110-like element ISYen1 family transposase	97.7	61.7	97.6
MGA_1053	LOCUS_10530	sequence1:1150273..1150650(+)	frameshift		1150249	WP_011816033.1	IS110-like element ISYen1 family transposase	100.0	36.9	96.8
MGA_1073	LOCUS_10730	sequence1:1175336..1175539(-)	partial			WP_005169235.1	acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase	83.6	21.4	100.0
MGA_1074	LOCUS_10740	sequence1:1176522..1176737(-)	frameshift		1176338,1176790	WP_034455038.1	IS110 family transposase	93.0	19.8	84.8
MGA_1124	LOCUS_11240	sequence1:1226361..1227143(-)	frameshift		1227223	WP_005173543.1	IS1182-like element ISYen4 family transposase	89.2	47.4	73.3
MGA_1126	LOCUS_11260	sequence1:1227613..1227795(-)	frameshift		1227645	WP_011817033.1	IS1182-like element ISYen4 family transposase	80.0	9.8	70.8
MGA_1128	LOCUS_11280	sequence1:1228805..1229434(-)	partial			WP_011816318.1	autotransporter outer membrane beta-barrel domain-containing protein	81.8	20.3	60.3
MGA_1137	LOCUS_11370	sequence1:1235939..1236199(+)	frameshift,internal_stop_codon	1236197..1236199(+)	1236280	WP_157032699.1	IS3 family transposase	100.0	21.3	89.5
MGA_1138	LOCUS_11380	sequence1:1236355..1237152(+)	frameshift,internal_stop_codon	1236197..1236199(+)	1236280	WP_157032699.1	IS3 family transposase	100.0	65.6	89.8
MGA_1142	LOCUS_11420	sequence1:1241926..1242405(-)	partial			WP_011816558.1	N-succinylarginine dihydrolase	100.0	35.6	96.9
MGA_1143	LOCUS_11430	sequence1:1242392..1242880(-)	partial			WP_011816558.1	N-succinylarginine dihydrolase	100.0	36.2	99.4
MGA_1196	LOCUS_11950	sequence1:1299836..1299979(+)	partial			WP_004117827.1	transposase	89.4	47.7	85.7
MGA_1197	LOCUS_11960	sequence1:1300075..1300443(+)	frameshift		1299973	WP_145933944.1	IS3 family transposase	100.0	33.0	91.8
MGA_1198	LOCUS_11970	sequence1:1300598..1300795(+)	partial			WP_000742511.1	phage major capsid protein, P2 family	76.9	14.2	76.0
MGA_1199	LOCUS_11980	sequence1:1300789..1300968(+)	partial			WP_011816104.1	phage holin family protein	100.0	46.1	91.5
MGA_1202	LOCUS_12010	sequence1:1301703..1301894(+)	partial			WP_223151184.1	Rz1-like lysis system protein LysC	82.5	63.4	48.1
MGA_1209	LOCUS_12080	sequence1:1305269..1305625(+)	partial			WP_002213212.1	GPW/gp25 family protein	69.5	82.8	90.2
MGA_1212	LOCUS_12110	sequence1:1307065..1307346(+)	frameshift		1307337	WP_054888002.1	phage tail protein	97.8	19.8	86.8
MGA_1213	LOCUS_12120	sequence1:1307319..1308611(+)	frameshift		1307337	WP_054888002.1	phage tail protein	98.6	80.2	68.8
MGA_1214	LOCUS_12130	sequence1:1308611..1308967(+)	frameshift		1308964	WP_011816236.1	tail fiber assembly protein	100.0	57.8	85.6
MGA_1215	LOCUS_12140	sequence1:1308960..1309223(+)	frameshift		1308964	WP_011816093.1	tail fiber assembly protein	97.7	41.7	91.8
MGA_1224	LOCUS_12230	sequence1:1313801..1314607(-)	partial			WP_011090919.1	IS21 family transposase	89.2	48.9	38.9
MGA_1226	LOCUS_12250	sequence1:1315833..1316609(-)	partial			WP_052821263.1	IS21 family transposase	98.4	50.7	48.4
MGA_1242	LOCUS_12410	sequence1:1328282..1329046(-)	partial			WP_001098422.1	terminase ATPase subunit family protein	93.7	41.0	37.9
MGA_1258	LOCUS_12570	sequence1:1337445..1338377(+)	partial			WP_157860177.1	retron St85 family RNA-directed DNA polymerase	73.5	41.1	27.7
MGA_1263	LOCUS_12620	sequence1:1340977..1342416(+)	partial			WP_011816094.1	phage tail protein	45.9	46.1	62.0
MGA_1283	LOCUS_12820	sequence1:1359737..1360009(-)	frameshift		1359760	WP_150100254.1	IS3-like element ISD1 family transposase	96.7	23.5	60.9
MGA_1284	LOCUS_12830	sequence1:1360085..1360378(+)	partial			WP_000051894.1	site-specific integrase	100.0	25.1	70.1
MGA_1287	LOCUS_12860	sequence1:1363153..1363533(+)	partial			WP_011816250.1	pyrimidine utilization protein A	100.0	34.3	96.8
MGA_1290	LOCUS_12890	sequence1:1364790..1365476(+)	internal_stop_codon	1365474..1365476(+)		WP_005169992.1	pyrimidine utilization protein D	100.0	82.0	96.9
MGA_1293	LOCUS_12920	sequence1:1366897..1367568(+)	frameshift,internal_stop_codon	1367603..1367605(+)	1367541	WP_005169999.1	pyrimidine utilization transport protein G	98.7	49.4	95.5
MGA_1294	LOCUS_12930	sequence1:1367642..1368232(+)	frameshift,internal_stop_codon	1367603..1367605(+)	1367541	WP_005169999.1	pyrimidine utilization transport protein G	100.0	44.3	93.9
MGA_1306	LOCUS_13050	sequence1:1384752..1384982(+)	frameshift		1384740	WP_002211161.1	DUF6516 family protein	100.0	78.4	78.9
MGA_1326	LOCUS_13250	sequence1:1404857..1405252(+)	frameshift		1404644	WP_011816595.1	hypothetical protein	100.0	59.8	91.6
MGA_1327	LOCUS_13260	sequence1:1405780..1405968(-)	partial			WP_174851148.1	hypothetical protein	96.8	3.0	86.7
MGA_1328	LOCUS_13270	sequence1:1406048..1406203(+)	internal_stop_codon	1406201..1406203(+)		WP_000362003.1	site-specific integrase	70.6	8.3	80.6
MGA_1389	LOCUS_13880	sequence1:1472390..1472767(+)	partial			WP_005168735.1	YlaC family protein	100.0	70.6	99.2
MGA_1391	LOCUS_13900	sequence1:1473558..1473716(+)	internal_stop_codon	1473714..1473716(+)		WP_050158480.1	Kdo hydroxylase family protein	100.0	17.3	94.2
MGA_1392	LOCUS_13910	sequence1:1473801..1474460(+)	internal_stop_codon	1473714..1473716(+)		WP_050158480.1	Kdo hydroxylase family protein	100.0	73.0	96.8
MGA_1396	LOCUS_13950	sequence1:1478676..1478909(-)	frameshift		1478943	WP_011815832.1	IS110-like element ISYen1 family transposase	100.0	22.7	97.4
MGA_1397	LOCUS_13960	sequence1:1478917..1479678(-)	frameshift		1478943	WP_011815821.1	IS110-like element ISYen1 family transposase	97.2	72.6	98.0
MGA_1403	LOCUS_14020	sequence1:1485894..1486085(+)	partial			WP_005168723.1	FGGY-family carbohydrate kinase	92.1	11.5	86.2
MGA_1404	LOCUS_14030	sequence1:1486428..1487438(+)	partial			WP_005168723.1	FGGY-family carbohydrate kinase	99.4	66.1	91.9
MGA_1405	LOCUS_14040	sequence1:1487435..1487824(-)	partial			WP_011816638.1	sugar ABC transporter substrate-binding protein	75.2	29.4	91.8
MGA_1409	LOCUS_14080	sequence1:1491971..1492594(-)	internal_stop_codon	1492613..1492615(-)		WP_000283667.1	zinc-binding phosphatase	94.7	80.4	48.5
MGA_1420	LOCUS_14190	sequence1:1502559..1503830(-)	partial			WP_109036361.1	RES domain-containing protein	72.3	60.8	39.3
MGA_1428	LOCUS_14270	sequence1:1516345..1516593(-)	partial			WP_013098477.1	ABC transporter substrate-binding protein	87.8	21.7	87.5
MGA_1454	LOCUS_14530	sequence1:1545824..1546177(-)	internal_stop_codon	1546220..1546222(-)		WP_005168562.1	GNAT family N-acetyltransferase	100.0	77.0	97.4
MGA_1455	LOCUS_14540	sequence1:1546875..1547513(-)	partial			WP_004388863.1	SDR family oxidoreductase	69.8	56.3	83.1
MGA_1462	LOCUS_14610	sequence1:1553496..1554179(-)	frameshift		1554246	WP_005168550.1	PTS sugar transporter	100.0	42.5	98.2
MGA_1463	LOCUS_14620	sequence1:1554082..1555101(-)	frameshift		1554240	WP_005168550.1	PTS sugar transporter	85.8	54.5	91.8
MGA_1470	LOCUS_14690	sequence1:1561168..1563897(-)	frameshift,internal_stop_codon	1561152..1561154(-)	1561170	WP_050298719.1	type VI secretion system Vgr family protein	72.8	78.7	95.8
MGA_1492	LOCUS_14910	sequence1:1592213..1592671(-)	frameshift		1592690	WP_011816680.1	LuxR family transcriptional regulator	100.0	76.0	94.7
MGA_1493	LOCUS_14920	sequence1:1592673..1592816(-)	frameshift		1592690	WP_011816680.1	LuxR family transcriptional regulator	89.4	21.0	97.6
MGA_1494	LOCUS_14930	sequence1:1593713..1594111(-)	partial			WP_001017569.1	nucleoside permease	100.0	31.6	63.6
MGA_1503	LOCUS_15020	sequence1:1600805..1601353(-)	frameshift		1601330	WP_011816682.1	cobalt ECF transporter S component CbiM	96.2	72.0	95.4
MGA_1551	LOCUS_15500	sequence1:1647484..1648533(+)	frameshift		1648461	WP_011816711.1	sugar ABC transporter ATP-binding protein	93.4	64.8	95.4
MGA_1552	LOCUS_15510	sequence1:1648449..1648976(+)	frameshift		1648461	WP_011816711.1	sugar ABC transporter ATP-binding protein	98.9	34.4	98.3
MGA_1567	LOCUS_15660	sequence1:1664788..1665594(-)	partial			WP_162421809.1	glycosyl transferase, group 1	91.8	53.2	29.5
MGA_1571	LOCUS_15700	sequence1:1669019..1669267(-)	frameshift,internal_stop_codon	1669335..1669337(-)	1669269	WP_145933944.1	IS3 family transposase	100.0	22.2	100.0
MGA_1651	LOCUS_16500	sequence1:1762277..1763725(-)	frameshift		1763772	WP_011816766.1	M3 family metallopeptidase	100.0	77.7	97.7
MGA_1652	LOCUS_16510	sequence1:1763764..1764129(-)	frameshift		1763772	WP_011816766.1	M3 family metallopeptidase	97.5	19.5	83.5
MGA_1660	LOCUS_16590	sequence1:1773312..1774106(-)	frameshift		1773344	WP_011816771.1	LysR family transcriptional regulator	95.8	83.2	96.0
MGA_1667	LOCUS_16660	sequence1:1780391..1781122(-)	frameshift		1781097	WP_011816775.1	fatty acid desaturase	96.7	66.8	98.3
MGA_1714	LOCUS_17130	sequence1:1830604..1830981(-)	frameshift		1830998	WP_011816801.1	molybdate ABC transporter substrate-binding protein	100.0	48.4	97.6
MGA_1715	LOCUS_17140	sequence1:1830975..1831379(-)	frameshift		1830995	WP_011816801.1	molybdate ABC transporter substrate-binding protein	95.5	49.6	85.2
MGA_1761	LOCUS_17590	sequence1:1878613..1879161(-)	frameshift		1878753	WP_005168006.1	5-oxoprolinase subunit PxpB	74.7	62.4	98.5
MGA_1766	LOCUS_17640	sequence1:1883643..1893380(-)	partial			WP_172625977.1	MARTX multifunctional-autoprocessing repeats-in-toxin holotoxin RtxA	33.2	23.9	50.6
MGA_1834	LOCUS_18320	sequence1:1971603..1971791(+)	partial			WP_011816850.1	LysR substrate-binding domain-containing protein	66.1	13.5	87.8
MGA_1835	LOCUS_18330	sequence1:1972053..1972337(+)	partial			WP_103675015.1	site-specific integrase	90.4	22.0	80.0
MGA_1844	LOCUS_18420	sequence1:1979096..1981426(+)	partial			WP_005490128.1	hypothetical protein	41.5	65.0	23.4
MGA_1848	LOCUS_18460	sequence1:1984086..1984937(-)	partial			WP_002209929.1	tyrosine-type recombinase/integrase	97.2	68.1	60.7
MGA_1856	LOCUS_18540	sequence1:1991381..1992109(-)	internal_stop_codon	1992137..1992139(-)		WP_011816856.1	ABC transporter permease	100.0	30.0	87.2
MGA_1857	LOCUS_18550	sequence1:1992137..1993807(-)	internal_stop_codon	1992137..1992139(-)		WP_011816856.1	ABC transporter permease	100.0	68.8	84.9
MGA_1880	LOCUS_18780	sequence1:2019439..2020395(-)	partial			WP_011201897.1	glycosyltransferase family 2 protein	66.4	59.6	30.7
MGA_1897	LOCUS_18950	sequence1:2041125..2041763(-)	frameshift		2041986,2042004,2041917,2041781	WP_011817033.1	IS1182-like element ISYen4 family transposase	99.1	42.9	63.3
MGA_1898	LOCUS_18960	sequence1:2041772..2041906(-)	frameshift		2041986,2042004,2041917,2041781	WP_011817033.1	IS1182-like element ISYen4 family transposase	90.9	8.2	90.0
MGA_1899	LOCUS_18970	sequence1:2041978..2042559(-)	frameshift		2041784,2042010,2041917,2041986	WP_005173543.1	IS1182-like element ISYen4 family transposase	94.8	37.4	76.0
MGA_1963	LOCUS_19610	sequence1:2110731..2111336(+)	frameshift		2111297	WP_011816205.1	IS110-like element ISYen1 family transposase	94.0	55.8	98.9
MGA_1964	LOCUS_19620	sequence1:2111299..2111751(+)	frameshift		2111297	WP_011816033.1	IS110-like element ISYen1 family transposase	100.0	44.2	97.3
MGA_1985	LOCUS_19830	sequence1:2138911..2139432(-)	partial			WP_011816921.1	ABC transporter substrate-binding protein	100.0	46.5	95.4
MGA_2022	LOCUS_20200	sequence1:2184424..2189526(-)	internal_stop_codon	2189530..2189532(-)		WP_011816940.1	filamentous hemagglutinin N-terminal domain-containing protein	87.4	72.2	87.1
MGA_2023	LOCUS_20210	sequence1:2189530..2191041(-)	internal_stop_codon	2189530..2189532(-)		WP_011816940.1	filamentous hemagglutinin N-terminal domain-containing protein	100.0	24.4	93.8
MGA_2032	LOCUS_20300	sequence1:2200357..2201475(-)	frameshift		2201423	WP_002208729.1	allantoate amidohydrolase	93.3	80.7	78.4
MGA_2063	LOCUS_20600	sequence1:2241063..2241713(+)	frameshift,internal_stop_codon	2240897..2240899(+)	2241058,2240815	WP_011816173.1	IS110-like element IS1328 family transposase	100.0	64.7	76.4
MGA_2079	LOCUS_20760	sequence1:2258167..2258475(-)	partial			WP_011815644.1	YqaA family protein	100.0	71.8	98.0
MGA_2087	LOCUS_20840	sequence1:2267476..2268237(+)	frameshift		2268210	WP_011815821.1	IS110-like element ISYen1 family transposase	97.2	72.6	98.4
MGA_2088	LOCUS_20850	sequence1:2268245..2268478(+)	frameshift		2268210	WP_011815832.1	IS110-like element ISYen1 family transposase	100.0	22.7	97.4
MGA_2095	LOCUS_20920	sequence1:2277562..2278431(+)	partial			WP_011969812.1	urea ABC transporter permease subunit UrtB	90.7	51.0	37.2
MGA_2102	LOCUS_20990	sequence1:2283879..2285096(+)	partial			WP_162992488.1	amidohydrolase	75.1	52.1	64.8
MGA_2111	LOCUS_21080	sequence1:2293543..2293884(-)	partial			WP_005167367.1	cupin domain-containing protein	100.0	57.7	96.5
MGA_2132	LOCUS_21290	sequence1:2317075..2317251(-)	frameshift		2317300	WP_046051553.1	fimbrial protein	100.0	34.7	98.3
MGA_2133	LOCUS_21300	sequence1:2317289..2317537(-)	frameshift		2317324	WP_046051553.1	fimbrial protein	98.8	48.5	97.5
MGA_2164	LOCUS_21610	sequence1:2347026..2347328(-)	partial			WP_003113341.1	DUF1641 domain-containing protein	88.0	61.7	40.9
MGA_2165	LOCUS_21620	sequence1:2347433..2347582(-)	frameshift		2347596	WP_003113342.1	FAD/NAD(P)-binding oxidoreductase	98.0	12.2	58.3
MGA_2175	LOCUS_21720	sequence1:2355044..2355571(-)	frameshift		2355573	WP_011816033.1	IS110-like element ISYen1 family transposase	100.0	51.6	97.1
MGA_2176	LOCUS_21730	sequence1:2355475..2356062(-)	frameshift		2355573	WP_011815832.1	IS110-like element ISYen1 family transposase	83.6	48.1	98.8
MGA_2178	LOCUS_21750	sequence1:2357407..2358318(+)	partial			WP_002213278.1	T3SS effector protein-tyrosine-phosphatase YopH	73.9	47.9	35.5
MGA_2221	LOCUS_22180	sequence1:2397400..2397795(+)	frameshift		2397352	WP_092874936.1	IS1 family transposase	100.0	56.7	87.0
MGA_2223	LOCUS_22200	sequence1:2398996..2399148(-)	partial			WP_011817124.1	amidohydrolase family protein	74.0	7.6	94.6
MGA_2250	LOCUS_22470	sequence1:2433225..2433419(-)	internal_stop_codon	2433432..2433434(-)		WP_011817169.1	efflux RND transporter permease subunit	100.0	6.1	89.1
MGA_2251	LOCUS_22480	sequence1:2433432..2435621(-)	internal_stop_codon	2433432..2433434(-)		WP_011817169.1	efflux RND transporter permease subunit	57.3	40.2	92.8
MGA_2283	LOCUS_22800	sequence1:2466801..2467421(-)	internal_stop_codon	2466801..2466803(-)		WP_002211424.1	hypothetical protein	80.1	49.6	50.3
MGA_2295	LOCUS_22920	sequence1:2476605..2477168(+)	partial			WP_002211436.1	flagellar basal body P-ring formation chaperone FlgA	99.5	66.0	70.4
MGA_2299	LOCUS_22960	sequence1:2480036..2480353(+)	frameshift		2480368,2480299	WP_110025204.1	IS3-like element ISKpn37 family transposase	85.7	23.2	85.6
MGA_2300	LOCUS_22970	sequence1:2481040..2481243(-)	partial			WP_005173543.1	IS1182-like element ISYen4 family transposase	97.0	13.3	92.3
MGA_2305	LOCUS_23020	sequence1:2486222..2486512(-)	frameshift,internal_stop_codon	2486173..2486175(-),2486221..2486223(-),2486725..2486727(-)	2486646	WP_150100254.1	IS3-like element ISD1 family transposase	95.8	24.9	55.4
MGA_2311	LOCUS_23080	sequence1:2492378..2492812(+)	partial			WP_011817193.1	CusA/CzcA family heavy metal efflux RND transporter	100.0	13.8	97.9
MGA_2320	LOCUS_23170	sequence1:2499216..2499398(+)	frameshift		2499395	WP_019079097.1	CpaF family protein	100.0	14.0	83.3
MGA_2366	LOCUS_23630	sequence1:2551521..2551976(+)	frameshift		2552249,2551973	WP_011816033.1	IS110-like element ISYen1 family transposase	100.0	44.5	98.0
MGA_2367	LOCUS_23640	sequence1:2552006..2552275(+)	frameshift		2552252,2551973	WP_011815821.1	IS110-like element ISYen1 family transposase	92.1	24.2	96.3
MGA_2368	LOCUS_23650	sequence1:2552283..2552516(+)	frameshift		2552248	WP_011816205.1	IS110-like element ISYen1 family transposase	100.0	22.7	92.2
MGA_2371	LOCUS_23680	sequence1:2554928..2555272(-)	frameshift		2554960	WP_013098780.1	phage tail protein	93.0	65.8	67.0
MGA_2378	LOCUS_23750	sequence1:2560265..2561704(-)	partial			WP_011816094.1	phage tail protein	45.9	46.1	62.0
MGA_2383	LOCUS_23800	sequence1:2564304..2565236(-)	partial			WP_157860177.1	retron St85 family RNA-directed DNA polymerase	73.5	41.1	27.7
MGA_2398	LOCUS_23950	sequence1:2573635..2574399(+)	partial			WP_001098422.1	terminase ATPase subunit family protein	93.7	41.0	37.9
MGA_2420	LOCUS_24170	sequence1:2594235..2595203(-)	frameshift		2595204	WP_011817231.1	glutamate decarboxylase	100.0	69.1	94.4
MGA_2421	LOCUS_24180	sequence1:2595175..2595636(-)	frameshift		2595210	WP_011817231.1	glutamate decarboxylase	100.0	33.0	91.6
MGA_2425	LOCUS_24220	sequence1:2600438..2601082(+)	frameshift		2601052	WP_011816205.1	IS110-like element ISYen1 family transposase	97.7	61.7	97.6
MGA_2426	LOCUS_24230	sequence1:2601079..2601456(+)	frameshift		2601055	WP_011816033.1	IS110-like element ISYen1 family transposase	100.0	36.9	98.4
MGA_2453	LOCUS_24500	sequence1:2629662..2629805(-)	partial			WP_011817249.1	NAD(P)-dependent alcohol dehydrogenase	100.0	13.4	100.0
MGA_2454	LOCUS_24510	sequence1:2629753..2630193(-)	internal_stop_codon	2630230..2630232(-)		WP_011817249.1	NAD(P)-dependent alcohol dehydrogenase	78.8	32.8	89.6
MGA_2455	LOCUS_24520	sequence1:2630230..2630628(-)	internal_stop_codon	2630230..2630232(-)		WP_011817249.1	NAD(P)-dependent alcohol dehydrogenase	100.0	37.6	100.0
MGA_2458	LOCUS_24550	sequence1:2633047..2634216(-)	partial			WP_011267391.1	fimbrial protein	73.5	69.5	27.8
MGA_2523	LOCUS_25200	sequence1:2706562..2707170(-)	internal_stop_codon	2706562..2706564(-)		WP_005174290.1	KDGP aldolase family protein	100.0	82.1	92.1
MGA_2542	LOCUS_25390	sequence1:2724338..2724721(+)	internal_stop_codon	2724719..2724721(+)		WP_002214297.1	LysR family transcriptional regulator	100.0	44.1	63.0
MGA_2543	LOCUS_25400	sequence1:2724833..2725108(+)	internal_stop_codon	2724719..2724721(+)		WP_002214297.1	LysR family transcriptional regulator	92.3	29.2	50.0
MGA_2544	LOCUS_25410	sequence1:2725188..2726960(+)	partial			WP_002210090.1	Tc toxin subunit A	46.8	34.6	52.4
MGA_2546	LOCUS_25430	sequence1:2727624..2731151(+)	partial			WP_011268887.1	neuraminidase-like domain-containing protein	64.0	30.9	40.2
MGA_2547	LOCUS_25440	sequence1:2731208..2734705(+)	internal_stop_codon	2734703..2734705(+)		WP_002210089.1	SpvB/TcaC N-terminal domain-containing protein	100.0	78.7	61.2
MGA_2548	LOCUS_25450	sequence1:2734763..2735710(+)	internal_stop_codon	2734703..2734705(+)		WP_002210089.1	SpvB/TcaC N-terminal domain-containing protein	98.4	19.5	49.5
MGA_2552	LOCUS_25490	sequence1:2737050..2739722(+)	partial			WP_002210084.1	RHS repeat-associated core domain-containing protein	75.5	71.3	69.9
MGA_2633	LOCUS_26300	sequence1:2844433..2844648(-)	partial			WP_034455038.1	IS110 family transposase	98.6	21.0	87.1
MGA_2634	LOCUS_26310	sequence1:2844606..2844797(-)	partial			WP_157032699.1	IS3 family transposase	92.1	14.4	77.6
MGA_2646	LOCUS_26420	sequence1:2862052..2862744(-)	frameshift		2862766	WP_195765897.1	energy transducer TonB	98.7	82.5	91.2
MGA_2696	LOCUS_26920	sequence1:2926795..2927058(-)	frameshift		2927053	WP_011816093.1	tail fiber assembly protein	97.7	41.7	89.4
MGA_2697	LOCUS_26930	sequence1:2927051..2927407(-)	frameshift		2927053	WP_011816236.1	tail fiber assembly protein	100.0	57.8	94.1
MGA_2698	LOCUS_26940	sequence1:2927533..2928297(+)	frameshift		2928244,2928247,2928223,2928207	WP_052821263.1	IS21 family transposase	98.0	49.9	44.4
MGA_2699	LOCUS_26950	sequence1:2928221..2929036(+)	frameshift		2928243,2928246	WP_011090919.1	IS21 family transposase	93.7	51.5	40.1
MGA_2701	LOCUS_26970	sequence1:2929796..2930569(+)	partial			WP_001098422.1	terminase ATPase subunit family protein	98.4	43.4	63.3
MGA_2704	LOCUS_27000	sequence1:2932582..2933337(+)	partial			WP_005478434.1	AAA family ATPase	97.6	59.9	41.2
MGA_2742	LOCUS_27380	sequence1:2970547..2971329(-)	frameshift		2971360	WP_005173543.1	IS1182-like element ISYen4 family transposase	99.2	52.8	67.4
MGA_2743	LOCUS_27390	sequence1:2971229..2971984(-)	frameshift		2971363	WP_005173543.1	IS1182-like element ISYen4 family transposase	82.9	41.5	70.7
MGA_2759	LOCUS_27550	sequence1:2990241..2990732(+)	frameshift,internal_stop_codon	2990730..2990732(+)	2990738	WP_011815832.1	IS110-like element ISYen1 family transposase	100.0	48.1	98.8
MGA_2760	LOCUS_27560	sequence1:2990809..2991261(+)	frameshift,internal_stop_codon	2990730..2990732(+)	2990738	WP_011815821.1	IS110-like element ISYen1 family transposase	100.0	44.2	96.7
MGA_2785	LOCUS_27810	sequence1:3020054..3020851(-)	frameshift,internal_stop_codon	3021007..3021009(-)	3020925	WP_157032699.1	IS3 family transposase	100.0	65.6	90.2
MGA_2786	LOCUS_27820	sequence1:3021007..3021267(-)	frameshift,internal_stop_codon	3021007..3021009(-)	3020925	WP_157032699.1	IS3 family transposase	100.0	21.3	89.5
MGA_2821	LOCUS_28160	sequence1:3064975..3065442(+)	partial			WP_002228151.1	polymer-forming cytoskeletal protein	95.5	66.4	71.6
MGA_2846	LOCUS_28410	sequence1:3093283..3093414(-)	frameshift,internal_stop_codon	3093511..3093513(-)	3093291	WP_005175128.1	threonine/serine dehydratase	100.0	13.5	76.7
MGA_2847	LOCUS_28420	sequence1:3093511..3094173(-)	frameshift,internal_stop_codon	3093511..3093513(-)	3093291	WP_005175128.1	threonine/serine dehydratase	100.0	69.0	96.4
MGA_2852	LOCUS_28470	sequence1:3098047..3098424(-)	frameshift		3098447	WP_011816033.1	IS110-like element ISYen1 family transposase	100.0	36.9	98.4
MGA_2853	LOCUS_28480	sequence1:3098421..3099065(-)	frameshift		3098450	WP_011816205.1	IS110-like element ISYen1 family transposase	97.7	61.7	97.1
MGA_2893	LOCUS_28870	sequence1:3150443..3150796(-)	frameshift		3150779	WP_011817425.1	xylose isomerase	96.6	25.7	96.5
MGA_2894	LOCUS_28880	sequence1:3150747..3151763(-)	frameshift		3150779	WP_011817425.1	xylose isomerase	97.0	74.7	97.6
MGA_2898	LOCUS_28920	sequence1:3156010..3156318(+)	frameshift		3156264	WP_011817422.1	DNA-binding transcriptional regulator	83.3	21.4	100.0
MGA_2899	LOCUS_28930	sequence1:3156233..3157204(+)	frameshift		3156264	WP_011817422.1	DNA-binding transcriptional regulator	97.2	79.1	99.4
MGA_2917	LOCUS_29110	sequence1:3179784..3180629(-)	frameshift		3180717	WP_005174960.1	carbohydrate porin	100.0	63.3	98.6
MGA_2918	LOCUS_29120	sequence1:3180676..3181119(-)	frameshift		3180717	WP_005174960.1	carbohydrate porin	91.8	30.4	99.3
MGA_2933	LOCUS_29270	sequence1:3196773..3197141(-)	frameshift		3197338	WP_011817401.1	filamentous hemagglutinin N-terminal domain-containing protein	75.4	23.0	44.6
MGA_2934	LOCUS_29280	sequence1:3197303..3197977(-)	frameshift		3197344	WP_011817401.1	filamentous hemagglutinin N-terminal domain-containing protein	94.6	57.3	64.2
MGA_2954	LOCUS_29480	sequence1:3223562..3224356(+)	internal_stop_codon	3224354..3224356(+)		WP_011817392.1	cellulose synthase complex outer membrane protein BcsC	98.5	22.4	96.5
MGA_2955	LOCUS_29490	sequence1:3224375..3227080(+)	internal_stop_codon	3224354..3224356(+)		WP_011817392.1	cellulose synthase complex outer membrane protein BcsC	100.0	77.0	89.7
MGA_3029	LOCUS_30230	sequence1:3327787..3328287(-)	partial			WP_011817358.1	DNA utilization protein GntX	100.0	73.1	94.0
MGA_3037	LOCUS_30310	sequence1:3337181..3338161(-)	partial			WP_011817361.1	hypothetical protein	49.4	83.4	93.8
MGA_3039	LOCUS_30330	sequence1:3339061..3340071(-)	partial			WP_011817361.1	hypothetical protein	10.7	18.7	100.0
MGA_3047	LOCUS_30410	sequence1:3347959..3349113(-)	frameshift		3349114	WP_011817351.1	intracellular growth attenuator family protein	100.0	53.7	95.1
MGA_3048	LOCUS_30420	sequence1:3349100..3350107(-)	frameshift		3349117	WP_011817351.1	intracellular growth attenuator family protein	98.8	46.3	94.6
MGA_3074	LOCUS_30680	sequence1:3378548..3379513(+)	internal_stop_codon	3379511..3379513(+)		WP_005174672.1	aspartate aminotransferase family protein	100.0	79.3	99.4
MGA_3075	LOCUS_30690	sequence1:3379535..3379765(+)	internal_stop_codon	3379511..3379513(+)		WP_005174672.1	aspartate aminotransferase family protein	100.0	18.8	94.7
MGA_3167	LOCUS_31600	sequence1:3462190..3464904(+)	partial			WP_011269148.1	S-type pyocin domain-containing protein	49.7	67.8	37.2
MGA_3195	LOCUS_31880	sequence1:3497138..3497860(+)	frameshift		3497737	WP_011815336.1	amino acid permease	87.1	45.6	90.0
MGA_3196	LOCUS_31890	sequence1:3497751..3498530(+)	frameshift		3497740	WP_011815336.1	amino acid permease	99.6	55.7	98.4
MGA_3197	LOCUS_31900	sequence1:3500122..3500727(+)	frameshift		3500688,3500803,3500752	WP_011816205.1	IS110-like element ISYen1 family transposase	94.0	55.8	98.9
MGA_3198	LOCUS_31910	sequence1:3500805..3501140(+)	frameshift		3500688,3500803,3500752	WP_011815832.1	IS110-like element ISYen1 family transposase	100.0	32.7	98.2
MGA_3244	LOCUS_32370	sequence1:3549984..3551288(+)	partial			WP_011706950.1	hypothetical protein	92.4	66.6	40.7
MGA_3245	LOCUS_32380	sequence1:3551173..3551478(-)	partial			WP_011815235.1	IS256 family transposase	93.1	23.5	91.5
MGA_3258	LOCUS_32510	sequence1:3564058..3565011(+)	frameshift		3564999	WP_011815362.1	sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB	99.4	71.8	98.4
MGA_3259	LOCUS_32520	sequence1:3564993..3565358(+)	frameshift		3564999	WP_011815362.1	sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB	96.7	26.7	99.1
MGA_3270	LOCUS_32630	sequence1:3577273..3577551(-)	frameshift		3577556,3577604,3577733,3577670	WP_011815821.1	IS110-like element ISYen1 family transposase	100.0	27.1	96.7
MGA_3271	LOCUS_32640	sequence1:3577701..3578288(-)	frameshift		3577673,3577556,3577733,3577607	WP_011815832.1	IS110-like element ISYen1 family transposase	94.9	54.6	98.4
MGA_3294	LOCUS_32860	sequence1:3607896..3608156(+)	frameshift,internal_stop_codon	3608154..3608156(+)	3608237	WP_157032699.1	IS3 family transposase	100.0	21.3	89.5
MGA_3295	LOCUS_32870	sequence1:3608312..3608869(+)	partial			WP_011816173.1	IS110-like element IS1328 family transposase	67.0	37.1	82.3
MGA_3299	LOCUS_32910	sequence1:3612520..3612972(-)	frameshift		3612540	WP_011815380.1	GNAT family N-acetyltransferase	95.3	78.1	99.3
MGA_3343	LOCUS_33340	sequence1:3668191..3669003(+)	partial			WP_000690723.1	type III secretion systems effector SseF	40.4	40.8	33.9
MGA_3358	LOCUS_33490	sequence1:3678838..3679224(+)	internal_stop_codon	3679222..3679224(+)		WP_002209052.1	type III secretion system export apparatus subunit SctT	100.0	48.5	71.9
MGA_3359	LOCUS_33500	sequence1:3679237..3679632(+)	internal_stop_codon	3679222..3679224(+)		WP_002209052.1	type III secretion system export apparatus subunit SctT	98.5	48.9	72.9
MGA_3361	LOCUS_33520	sequence1:3680897..3681136(+)	partial			WP_002209054.1	selenium metabolism membrane protein YedE/FdhT	79.7	15.6	93.7
MGA_3362	LOCUS_33530	sequence1:3681084..3681362(+)	partial			WP_002209054.1	selenium metabolism membrane protein YedE/FdhT	97.8	22.3	91.1
MGA_3390	LOCUS_33810	sequence1:3716160..3716372(+)	frameshift		3716285	WP_011815413.1	glycerate kinase	60.0	10.9	100.0
MGA_3420	LOCUS_34110	sequence1:3748697..3749242(+)	frameshift		3749218	WP_005175510.1	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	99.4	57.5	96.7
MGA_3421	LOCUS_34120	sequence1:3749323..3749637(+)	frameshift		3749221	WP_005175510.1	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	100.0	33.2	99.0
MGA_3431	LOCUS_34220	sequence1:3760273..3761580(+)	internal_stop_codon	3761578..3761580(+)		WP_011815428.1	isovaleryl-CoA dehydrogenase	100.0	79.5	96.8
MGA_3432	LOCUS_34230	sequence1:3761587..3761904(+)	internal_stop_codon	3761578..3761580(+)		WP_011815428.1	isovaleryl-CoA dehydrogenase	100.0	19.2	98.1
MGA_3487	LOCUS_34780	sequence1:3820355..3821569(+)	partial			WP_011815451.1	efflux transporter outer membrane subunit	77.5	67.5	79.5
MGA_3509	LOCUS_35000	sequence1:3845550..3845861(-)	frameshift,internal_stop_codon	3845873..3845875(-)	3845887	WP_005175328.1	ribose 1,5-bisphosphokinase	100.0	53.6	86.4
MGA_3510	LOCUS_35010	sequence1:3845849..3846127(-)	frameshift,internal_stop_codon	3845873..3845875(-)	3845887	WP_005175328.1	ribose 1,5-bisphosphokinase	89.1	42.7	95.1
MGA_3515	LOCUS_35060	sequence1:3849682..3849954(-)	frameshift		3849959	WP_011815465.1	carbon-phosphorus lyase complex subunit PhnI	100.0	24.3	92.2
MGA_3516	LOCUS_35070	sequence1:3849957..3850793(-)	frameshift		3849959	WP_011815465.1	carbon-phosphorus lyase complex subunit PhnI	100.0	75.1	97.5
MGA_3533	LOCUS_35240	sequence1:3868257..3869018(+)	frameshift		3868991	WP_011815821.1	IS110-like element ISYen1 family transposase	97.2	72.6	98.4
MGA_3534	LOCUS_35250	sequence1:3869026..3869259(+)	frameshift		3868991	WP_011815832.1	IS110-like element ISYen1 family transposase	100.0	22.7	97.4
MGA_3541	LOCUS_35320	sequence1:3878976..3879209(+)	partial			WP_034461534.1	DUF4942 domain-containing protein	98.7	26.7	60.5
MGA_3542	LOCUS_35330	sequence1:3879262..3879534(+)	partial			WP_011141823.1	ribbon-helix-helix domain-containing protein	70.0	69.2	42.9
MGA_3545	LOCUS_35360	sequence1:3880948..3881136(+)	partial			WP_157032699.1	IS3 family transposase	88.7	13.9	75.0
MGA_3548	LOCUS_35390	sequence1:3883343..3884953(+)	partial			WP_181238188.1	helicase YjhR	92.5	42.4	76.0
MGA_3551	LOCUS_35420	sequence1:3886576..3886803(+)	frameshift		3886785	WP_005175249.1	cytosine permease	93.3	16.1	100.0
MGA_3552	LOCUS_35430	sequence1:3886796..3887881(+)	frameshift		3886785	WP_005175249.1	cytosine permease	100.0	83.0	95.3
MGA_3559	LOCUS_35500	sequence1:3893349..3893681(-)	partial			WP_011815485.1	hypothetical protein	90.0	53.2	93.9
MGA_3682	LOCUS_36730	sequence1:4053385..4054032(-)	internal_stop_codon	4054093..4054095(-)		WP_005167041.1	tryptophanase	100.0	46.1	100.0
MGA_3683	LOCUS_36740	sequence1:4054093..4054785(-)	internal_stop_codon	4054093..4054095(-)		WP_005167041.1	tryptophanase	100.0	49.4	100.0
MGA_3711	LOCUS_37020	sequence1:4088818..4089156(+)	partial			WP_005156845.1	secA translation cis-regulator SecM	100.0	63.3	92.9
MGA_3735	LOCUS_37260	sequence1:4121681..4121920(+)	frameshift,internal_stop_codon	4121920..4121922(+)	4121706,4121670	WP_015704291.1	ribonuclease toxin immunity protein CdiI	89.9	61.2	78.9
MGA_3768	LOCUS_37590	sequence1:4160200..4160517(-)	internal_stop_codon	4160563..4160565(-)		WP_005167238.1	two-component sensor histidine kinase BarA	100.0	11.1	98.1
MGA_3769	LOCUS_37600	sequence1:4160563..4163019(-)	internal_stop_codon	4160563..4160565(-)		WP_005167238.1	two-component sensor histidine kinase BarA	95.5	82.7	96.8
MGA_3770	LOCUS_37610	sequence1:4163616..4164494(+)	partial			WP_005167240.1	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	100.0	65.9	96.6
MGA_3788	LOCUS_37790	sequence1:4186006..4186383(-)	frameshift		4186406	WP_011816033.1	IS110-like element ISYen1 family transposase	100.0	36.9	97.6
MGA_3789	LOCUS_37800	sequence1:4186380..4187024(-)	frameshift		4186409	WP_011816205.1	IS110-like element ISYen1 family transposase	97.7	61.7	97.1
MGA_3794	LOCUS_37850	sequence1:4189860..4190600(+)	frameshift		4190588	WP_011817023.1	two-component system sensor histidine kinase CreC	100.0	51.8	93.9
MGA_3795	LOCUS_37860	sequence1:4190569..4191282(+)	frameshift		4190588	WP_011817023.1	two-component system sensor histidine kinase CreC	97.0	48.4	97.8
MGA_3801	LOCUS_37920	sequence1:4197558..4198427(+)	frameshift		4197403	WP_011817019.1	peptide chain release factor 2	100.0	79.2	99.3
MGA_3809	LOCUS_38000	sequence1:4204196..4204534(+)	partial			WP_002209918.1	Fic family protein	87.5	25.8	93.9
MGA_3810	LOCUS_38010	sequence1:4204522..4205118(+)	partial			WP_005173446.1	Fic family protein	81.3	42.4	93.8
MGA_3813	LOCUS_38040	sequence1:4207572..4207949(-)	frameshift		4207972	WP_011816033.1	IS110-like element ISYen1 family transposase	100.0	36.9	98.4
MGA_3814	LOCUS_38050	sequence1:4207946..4208590(-)	frameshift		4207975	WP_011816205.1	IS110-like element ISYen1 family transposase	97.7	61.7	97.6
MGA_3822	LOCUS_38130	sequence1:4214024..4215658(+)	frameshift		4215655	WP_005173419.1	type II secretion system secretin GspD	100.0	84.0	95.4
MGA_3823	LOCUS_38140	sequence1:4215681..4215962(+)	frameshift		4215649	WP_005173419.1	type II secretion system secretin GspD	100.0	14.4	93.5
MGA_3825	LOCUS_38160	sequence1:4217451..4217936(+)	frameshift		4217924	WP_011817004.1	type II secretion system F family protein	100.0	40.0	97.5
MGA_3826	LOCUS_38170	sequence1:4218296..4218652(+)	partial			WP_011817004.1	type II secretion system F family protein	100.0	29.4	75.4
MGA_3828	LOCUS_38190	sequence1:4219238..4219522(+)	frameshift		4219212	WP_011817002.1	type II secretion system minor pseudopilin GspI	100.0	78.3	89.4
MGA_3830	LOCUS_38210	sequence1:4220183..4220458(+)	frameshift		4220449	WP_011817000.1	type II secretion system protein GspK	100.0	29.1	84.6
MGA_3831	LOCUS_38220	sequence1:4220445..4221071(+)	frameshift		4220449	WP_011817000.1	type II secretion system protein GspK	96.6	64.2	93.0
MGA_3832	LOCUS_38230	sequence1:4221071..4221856(+)	frameshift		4221838	WP_011816999.1	type II secretion system protein GspL	98.5	64.6	94.6
MGA_3833	LOCUS_38240	sequence1:4221907..4222266(+)	frameshift		4221841	WP_011816999.1	type II secretion system protein GspL	100.0	29.9	87.4
MGA_3835	LOCUS_38260	sequence1:4223118..4223555(+)	frameshift		4223053	WP_011816997.1	A24 family peptidase	98.6	51.6	65.0
MGA_3840	LOCUS_38310	sequence1:4225584..4226330(+)	internal_stop_codon	4226328..4226330(+)		WP_046050327.1	methyl-accepting chemotaxis protein	100.0	44.5	92.7
MGA_3841	LOCUS_38320	sequence1:4226352..4227035(+)	internal_stop_codon	4226328..4226330(+)		WP_046050327.1	methyl-accepting chemotaxis protein	100.0	40.8	93.0
MGA_3849	LOCUS_38400	sequence1:4235019..4235219(+)	frameshift		4235147	WP_011816989.1	molybdopterin guanine dinucleotide-containing S/N-oxide reductase	68.2	6.0	97.8
MGA_3927	LOCUS_39170	sequence1:4333546..4334412(+)	partial			WP_032901333.1	beta-ketoacyl-ACP synthase	100.0	70.1	98.6
MGA_3932	LOCUS_39220	sequence1:4338981..4339805(-)	internal_stop_codon	4339809..4339811(-)		WP_011816173.1	IS110-like element IS1328 family transposase	100.0	82.0	77.0
MGA_3933	LOCUS_39230	sequence1:4339809..4340051(-)	internal_stop_codon	4339809..4339811(-)		WP_034455038.1	IS110 family transposase	71.2	17.1	82.5
MGA_3951	LOCUS_39410	sequence1:4356752..4357495(-)	partial			WP_072085922.1	hypothetical protein	100.0	67.3	89.1
MGA_3958	LOCUS_39480	sequence1:4361710..4362012(-)	partial			WP_050122195.1	transcriptional regulator FtrA	100.0	30.6	98.0
MGA_3959	LOCUS_39490	sequence1:4361939..4362238(-)	partial			WP_050122195.1	transcriptional regulator FtrA	73.7	22.3	90.4
MGA_3982	LOCUS_39720	sequence1:4383552..4383929(-)	frameshift		4383952	WP_011816033.1	IS110-like element ISYen1 family transposase	100.0	36.9	97.6
MGA_3983	LOCUS_39730	sequence1:4383926..4384570(-)	frameshift		4383955	WP_011816205.1	IS110-like element ISYen1 family transposase	97.7	61.7	97.1
MGA_4003	LOCUS_39930	sequence1:4404039..4404641(+)	frameshift		4404000,4404600	WP_011815750.1	DUF2974 domain-containing protein	94.5	58.0	95.2
MGA_4004	LOCUS_39940	sequence1:4404638..4404838(+)	frameshift		4404605	WP_011815750.1	DUF2974 domain-containing protein	100.0	20.4	95.5
MGA_4007	LOCUS_39970	sequence1:4407638..4408315(-)	frameshift		4408433	WP_034455038.1	IS110 family transposase	96.4	65.0	93.5
MGA_4033	LOCUS_40230	sequence1:4436279..4436587(-)	partial			WP_002211559.1	hypothetical protein	96.1	52.7	56.1
MGA_4063	LOCUS_40530	sequence1:4467248..4469773(-)	partial			WP_154080877.1	autotransporter outer membrane beta-barrel domain-containing protein	100.0	61.9	48.1
MGA_4064	LOCUS_40540	sequence1:4470079..4470978(-)	frameshift		4470099	WP_154080877.1	autotransporter outer membrane beta-barrel domain-containing protein	88.6	22.8	28.9
MGA_4077	LOCUS_40670	sequence1:4492924..4493661(+)	frameshift		4493514	WP_005172553.1	AEC family transporter	80.4	61.9	95.4
MGA_4078	LOCUS_40680	sequence1:4493682..4493879(+)	frameshift		4493517	WP_005172553.1	AEC family transporter	100.0	20.4	92.3
MGA_4087	LOCUS_40770	sequence1:4505155..4505388(-)	frameshift		4505419	WP_011816205.1	IS110-like element ISYen1 family transposase	100.0	22.7	94.8
MGA_4088	LOCUS_40780	sequence1:4505396..4506157(-)	frameshift		4505422	WP_011815821.1	IS110-like element ISYen1 family transposase	97.2	72.6	98.0
MGA_4092	LOCUS_40820	sequence1:4509644..4509976(+)	partial			WP_005172517.1	inhibitor of vertebrate lysozyme family protein	100.0	62.5	96.4
MGA_4112	LOCUS_41020	sequence1:4533030..4533716(-)	partial			WP_050298642.1	diguanylate cyclase	71.5	14.6	92.0
MGA_4133	LOCUS_41230	sequence2:9675..9866(-)	frameshift		9680,9607	WP_211935309.1	IS3 family transposase	90.5	15.4	71.9
MGA_4137	LOCUS_41270	sequence2:13074..13217(+)	frameshift		13314,13214	WP_121576702.1	IS3 family transposase	97.9	12.5	65.2
MGA_4138	LOCUS_41280	sequence2:13177..13335(+)	frameshift		13208	WP_139109819.1	transposase	76.9	45.5	60.0
MGA_4139	LOCUS_41290	sequence2:13583..13981(+)	frameshift		13560,13329,13965	WP_150100254.1	IS3-like element ISD1 family transposase	95.5	34.1	57.9
MGA_4141	LOCUS_41310	sequence2:14811..15080(+)	internal_stop_codon	15078..15080(+)		WP_001143760.1	Tn3-like element Tn3 family transposase	95.5	8.5	96.5
MGA_4142	LOCUS_41320	sequence2:15084..15728(+)	frameshift,internal_stop_codon	15078..15080(+)	15650	WP_001143760.1	Tn3-like element Tn3 family transposase	92.1	19.7	93.4
MGA_4143	LOCUS_41330	sequence2:15908..16093(-)	frameshift,internal_stop_codon	15908..15910(-),16248..16250(-)	16133	WP_071892915.1	DDE-type integrase/transposase/recombinase	100.0	45.2	72.9
MGA_4148	LOCUS_41380	sequence2:20195..21046(-)	partial			WP_011074356.1	Tn3-like element ISSod9 family transposase	61.5	17.5	59.7
MGA_4154	LOCUS_41440	sequence2:24842..25291(+)	partial			WP_000948348.1	conjugative transfer relaxase/helicase TraI	83.9	7.2	44.9
MGA_4155	LOCUS_41450	sequence2:25493..26005(-)	frameshift		26050,26146,25509,26270	WP_150100254.1	IS3-like element ISD1 family transposase	96.5	44.3	54.9
MGA_4156	LOCUS_41460	sequence2:26141..26299(-)	frameshift		26267	WP_139109819.1	transposase	76.9	45.5	60.0
MGA_4157	LOCUS_41470	sequence2:26259..26402(-)	frameshift		26161,26261	WP_121576702.1	IS3 family transposase	97.9	12.5	65.2
MGA_4158	LOCUS_41480	sequence2:26715..26933(+)	partial			WP_011815234.1	hypothetical protein	65.3	66.2	97.9
MGA_4159	LOCUS_41490	sequence2:26994..27437(-)	frameshift,internal_stop_codon	27547..27549(-)	27443,27492,27573	WP_003119264.1	IS481 family transposase	83.7	35.7	54.5
MGA_4166	LOCUS_41560	sequence2:33792..34295(+)	frameshift		34338,33750,34287	WP_010891287.1	IS3 family transposase	98.8	60.4	80.0
MGA_4188	LOCUS_41780	sequence2:51062..52609(-)	partial			WP_002212950.1	type III secretion system needle length determinant YscP	63.7	72.1	86.9
MGA_4203	LOCUS_41930	sequence2:63496..63726(+)	frameshift,internal_stop_codon	63725..63727(+)	63721	WP_011815235.1	IS256 family transposase	78.9	15.0	83.3
MGA_4204	LOCUS_41940	sequence2:63781..63996(+)	frameshift,internal_stop_codon	63725..63727(+)	63721	WP_011815235.1	IS256 family transposase	98.6	17.5	92.9
MGA_4206	LOCUS_41960	sequence2:66290..66481(+)	frameshift		66424,66234,66599	WP_002222515.1	hypothetical protein	98.4	44.6	71.0
MGA_4207	LOCUS_41970	sequence2:66999..67511(-)	frameshift		67015,67651,67775	WP_150100254.1	IS3-like element ISD1 family transposase	96.5	44.3	54.9
MGA_4208	LOCUS_41980	sequence2:67646..67804(-)	frameshift		67769,67660	WP_157130138.1	IS3 family transposase	76.9	10.8	62.5
MGA_4209	LOCUS_41990	sequence2:67764..67907(-)	frameshift		67666,67766	WP_121576702.1	IS3 family transposase	97.9	12.5	65.2
MGA_4210	LOCUS_42000	sequence2:68242..68454(+)	internal_stop_codon	68179..68181(+)		WP_000766808.1	DUF2726 domain-containing protein	90.0	32.1	55.6