{
    "type": "genome",
    "identifier": "GCF_000254515.1",
    "organism": "Campylobacter jejuni subsp. jejuni ATCC 33560",
    "title": "Campylobacter jejuni subsp. jejuni ATCC 33560",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Cornell University",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_000254515.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN02428947",
        "wgs_master": "AIOL00000000.1",
        "refseq_category": "na",
        "taxid": "889247",
        "species_taxid": "197",
        "organism_name": "Campylobacter jejuni subsp. jejuni ATCC 33560",
        "infraspecific_name": "strain=ATCC 33560",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2012/03/16",
        "asm_name": "ASM25451v2",
        "asm_submitter": "Cornell University",
        "gbrs_paired_asm": "GCA_000254515.2",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/254/515/GCF_000254515.1_ASM25451v2",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "1712461",
        "genome_size_ungapped": "1712461",
        "gc_percent": "30.000000",
        "replicon_count": "0",
        "scaffold_count": "220",
        "contig_count": "220",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_000254515.1-RS_2024_06_20",
        "annotation_date": "2024-06-20",
        "total_gene_count": "1875",
        "protein_coding_gene_count": "1672",
        "non_coding_gene_count": "38",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2012-03-16",
    "dateModified": "2012-03-16",
    "datePublished": "2012-03-16",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Campylobacter jejuni subsp. jejuni ATCC 33560"
        ],
        "sample_taxid": [
            "889247"
        ],
        "sample_host_organism": [
            "bovine"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Belgium: Brussels"
        ],
        "sample_host_location_id": [],
        "data_size": "0.474 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "1712461",
        "Number of Sequences": "220",
        "Longest Sequences (bp)": "75406",
        "N50 (bp)": "24688",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "30.2",
        "Number of CDSs": "1703",
        "Average Protein Length": "295.2",
        "Coding Ratio (%)": "88.1",
        "Number of rRNAs": "2",
        "Number of tRNAs": "32",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Campylobacter jejuni subsp. jejuni",
                "strain": "strain=ATCC 33560",
                "accession": "GCA_000254515.2",
                "taxid": 32022,
                "species_taxid": 197,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 488,
                "total_fragments": 491,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Campylobacter jejuni subsp. jejuni",
                "strain": "strain=CCUG 11284",
                "accession": "GCA_008802045.1",
                "taxid": 32022,
                "species_taxid": 197,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9994,
                "matched_fragments": 491,
                "total_fragments": 491,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Campylobacter jejuni subsp. jejuni",
                "strain": "strain=ATCC 33560",
                "accession": "GCA_003999645.1",
                "taxid": 32022,
                "species_taxid": 197,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9992,
                "matched_fragments": 491,
                "total_fragments": 491,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Campylobacter jejuni",
                "strain": "strain=NCTC11351",
                "accession": "GCA_001457695.1",
                "taxid": 197,
                "species_taxid": 197,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9983,
                "matched_fragments": 491,
                "total_fragments": 491,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Campylobacter jejuni subsp. jejuni",
                "strain": "strain=type strain: CCUG11284",
                "accession": "GCA_905410075.1",
                "taxid": 32022,
                "species_taxid": 197,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9981,
                "matched_fragments": 482,
                "total_fragments": 491,
                "ani_threshold": 95,
                "status": "conclusive"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_001457695.1",
                "gtdb_species": "s__Campylobacter_D jejuni",
                "ani": 99.9983,
                "matched_fragments": 491,
                "total_fragments": 491,
                "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_D",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.50",
                "min_intra_species_ani": "95.69",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.84",
                "num_clustered_genomes": 1918,
                "status": "conclusive"
            },
            {
                "accession": "GCA_014305285.1",
                "gtdb_species": "s__Campylobacter_D jejuni_D",
                "ani": 94.1969,
                "matched_fragments": 430,
                "total_fragments": 491,
                "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_D",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.99",
                "min_intra_species_ani": "99.99",
                "mean_intra_species_af": "0.99",
                "min_intra_species_af": "0.99",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_000163995.1",
                "gtdb_species": "s__Campylobacter_D jejuni_A",
                "ani": 91.108,
                "matched_fragments": 447,
                "total_fragments": 491,
                "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_D",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000254135.1",
                "gtdb_species": "s__Campylobacter_D coli",
                "ani": 85.5877,
                "matched_fragments": 389,
                "total_fragments": 491,
                "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_D",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.69",
                "min_intra_species_ani": "96.32",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.84",
                "num_clustered_genomes": 983,
                "status": "-"
            },
            {
                "accession": "GCF_001687475.2",
                "gtdb_species": "s__Campylobacter_D hepaticus",
                "ani": 83.9806,
                "matched_fragments": 379,
                "total_fragments": 491,
                "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_D",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.94",
                "min_intra_species_ani": "99.56",
                "mean_intra_species_af": "0.99",
                "min_intra_species_af": "0.97",
                "num_clustered_genomes": 33,
                "status": "-"
            },
            {
                "accession": "GCF_009362725.1",
                "gtdb_species": "s__Campylobacter_D hepaticus_A",
                "ani": 83.7069,
                "matched_fragments": 372,
                "total_fragments": 491,
                "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_D",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "0.99",
                "min_intra_species_af": "0.99",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_000470055.1",
                "gtdb_species": "s__Campylobacter_D coli_A",
                "ani": 83.1063,
                "matched_fragments": 398,
                "total_fragments": 491,
                "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_D",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.85",
                "min_intra_species_ani": "97.41",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.91",
                "num_clustered_genomes": 86,
                "status": "-"
            },
            {
                "accession": "GCF_002179165.1",
                "gtdb_species": "s__Campylobacter_D jejuni_B",
                "ani": 82.8895,
                "matched_fragments": 396,
                "total_fragments": 491,
                "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_D",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": 0.049,
        "cell_length": 0.155,
        "doubling_h": 0.058,
        "growth_tmp": 38.6,
        "optimum_tmp": 41.765,
        "optimum_ph": 7.0,
        "genome_size": 1708071.414,
        "gc_content": 30.329,
        "coding_genes": 1645.267,
        "rRNA16S_genes": 2.941,
        "tRNA_genes": 42.034,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 1.0,
        "range_salinity": 0.0,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 0.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 1.0
    },
    "_genome_taxon": [
        "Campylobacter",
        "jejuni",
        "subsp.",
        "jejuni",
        "ATCC",
        "33560"
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}