{
    "type": "genome",
    "identifier": "GCF_000255115.2",
    "organism": "Desulfosporosinus acidiphilus SJ4",
    "title": "Desulfosporosinus acidiphilus SJ4",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "DOE Joint Genome Institute",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_000255115.2",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN02232014",
        "wgs_master": "na",
        "refseq_category": "reference genome",
        "taxid": "646529",
        "species_taxid": "885581",
        "organism_name": "Desulfosporosinus acidiphilus SJ4",
        "infraspecific_name": "strain=SJ4",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Complete Genome",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2012/06/15",
        "asm_name": "ASM25511v3",
        "asm_submitter": "DOE Joint Genome Institute",
        "gbrs_paired_asm": "GCA_000255115.3",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/255/115/GCF_000255115.2_ASM25511v3",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "4991181",
        "genome_size_ungapped": "4991181",
        "gc_percent": "42.000000",
        "replicon_count": "3",
        "scaffold_count": "3",
        "contig_count": "3",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_000255115.2-RS_2024_05_13",
        "annotation_date": "2024-05-13",
        "total_gene_count": "4713",
        "protein_coding_gene_count": "4564",
        "non_coding_gene_count": "97",
        "pubmed_id": "23105050"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2012-06-15",
    "dateModified": "2012-06-15",
    "datePublished": "2012-06-15",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Desulfosporosinus acidiphilus SJ4"
        ],
        "sample_taxid": [
            "646529"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [
            "None"
        ],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "France"
        ],
        "sample_host_location_id": [],
        "data_size": "1.417 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 2.08,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "4991181",
        "Number of Sequences": "3",
        "Longest Sequences (bp)": "4926837",
        "N50 (bp)": "4926837",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "42.1",
        "Number of CDSs": "4622",
        "Average Protein Length": "294.9",
        "Coding Ratio (%)": "81.9",
        "Number of rRNAs": "25",
        "Number of tRNAs": "66",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Desulfosporosinus acidiphilus",
                "strain": "strain=SJ4",
                "accession": "GCA_000255115.3",
                "taxid": 885581,
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                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1663,
                "total_fragments": 1663,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Desulfosporosinus acididurans",
                "strain": "strain=M1",
                "accession": "GCA_001029285.1",
                "taxid": 476652,
                "species_taxid": 476652,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.2462,
                "matched_fragments": 807,
                "total_fragments": 1663,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Desulfosporosinus meridiei",
                "strain": "strain=DSM 13257",
                "accession": "GCA_000231385.3",
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                "species_taxid": 79209,
                "relation_to_type": "type",
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                "ani": 78.6018,
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                "total_fragments": 1663,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Desulfosporosinus hippei",
                "strain": "strain=DSM 8344",
                "accession": "GCA_900100785.1",
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                "species_taxid": 569859,
                "relation_to_type": "type",
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                "ani": 77.5343,
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                "total_fragments": 1663,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Desulfosporosinus metallidurans",
                "strain": "strain=OL",
                "accession": "GCA_001936615.1",
                "taxid": 1888891,
                "species_taxid": 1888891,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.4577,
                "matched_fragments": 239,
                "total_fragments": 1663,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 2.08,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_000255115.2",
                "gtdb_species": "s__Desulfosporosinus acidiphilus",
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                "matched_fragments": 1663,
                "total_fragments": 1663,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_B;c__Desulfitobacteriia;o__Desulfitobacteriales;f__Desulfitobacteriaceae;g__Desulfosporosinus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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            },
            {
                "accession": "GCF_001029285.1",
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                "matched_fragments": 808,
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_B;c__Desulfitobacteriia;o__Desulfitobacteriales;f__Desulfitobacteriaceae;g__Desulfosporosinus",
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                "mean_intra_species_ani": "96.53",
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                "mean_intra_species_af": "0.82",
                "min_intra_species_af": "0.82",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_002196705.1",
                "gtdb_species": "s__Desulfosporosinus sp002196705",
                "ani": 81.1873,
                "matched_fragments": 849,
                "total_fragments": 1663,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_B;c__Desulfitobacteriia;o__Desulfitobacteriales;f__Desulfitobacteriaceae;g__Desulfosporosinus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000231385.2",
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                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000244895.1",
                "gtdb_species": "s__Desulfosporosinus youngiae",
                "ani": 78.4055,
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_B;c__Desulfitobacteriia;o__Desulfitobacteriales;f__Desulfitobacteriaceae;g__Desulfosporosinus",
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                "mean_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_004766055.1",
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            {
                "accession": "GCF_900100785.1",
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            },
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                "accession": "GCA_000770645.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_B;c__Desulfitobacteriia;o__Desulfitobacteriales;f__Desulfitobacteriaceae;g__Desulfosporosinus",
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            },
            {
                "accession": "GCA_001516045.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_B;c__Desulfitobacteriia;o__Desulfitobacteriales;f__Desulfitobacteriaceae;g__Desulfosporosinus",
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                "mean_intra_species_ani": "N/A",
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                "num_clustered_genomes": 1,
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            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.103,
        "cell_length": 0.582,
        "doubling_h": null,
        "growth_tmp": 28.142,
        "optimum_tmp": 28.25,
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        "gc_content": 42.349,
        "coding_genes": 4782.833,
        "rRNA16S_genes": 9.5,
        "tRNA_genes": 76.5,
        "gram_stain": 0.4,
        "sporulation": 1.0,
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        "anaerobic_respiration": 1.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Desulfosporosinus",
        "acidiphilus",
        "SJ4"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}