{ "type": "genome", "identifier": "GCF_000257205.1", "organism": "Vibrio ordalii ATCC 33509", "title": "Vibrio ordalii ATCC 33509", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Oregon Health Sciences University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000257205.1", "bioproject": "PRJNA224116", "biosample": "SAMN02470772", "wgs_master": "AEZC00000000.1", "refseq_category": "na", "taxid": "990998", "species_taxid": "28174", "organism_name": "Vibrio ordalii ATCC 33509", "infraspecific_name": "strain=ATCC 33509", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2011/06/22", "asm_name": "ASM25720v1", "asm_submitter": "Oregon Health Sciences University", "gbrs_paired_asm": "GCA_000257205.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/257/205/GCF_000257205.1_ASM25720v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3412166", "genome_size_ungapped": "3412166", "gc_percent": "44.500000", "replicon_count": "0", "scaffold_count": "254", "contig_count": "254", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000257205.1-RS_2024_06_22", "annotation_date": "2024-06-22", "total_gene_count": "3199", "protein_coding_gene_count": "2924", "non_coding_gene_count": "70", "pubmed_id": "21576332" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2011-06-22", "dateModified": "2011-06-22", "datePublished": "2011-06-22", "_annotation": { "sample_count": 1, "sample_organism": [ "Vibrio ordalii ATCC 33509" ], "sample_taxid": [ "990998" ], "sample_host_organism": [ "Oncorhynchus kisutch (Coho salmon)" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA: Puget Sound, Washington" ], "sample_host_location_id": [], "data_size": "0.981 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3412166", "Number of Sequences": "254", "Longest Sequences (bp)": "104133", "N50 (bp)": "29345", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "44.7", "Number of CDSs": "2980", "Average Protein Length": "319.8", "Coding Ratio (%)": "83.8", "Number of rRNAs": "4", "Number of tRNAs": "61", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Vibrio qinghaiensis", "strain": "strain=Q67", "accession": "GCA_002257545.1", "taxid": 2025808, "species_taxid": 2025808, "relation_to_type": "type", "validated": true, "ani": 98.8744, "matched_fragments": 990, "total_fragments": 1032, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Vibrio anguillarum", "strain": "strain=DSM 21597", "accession": "GCA_001989995.2", "taxid": 55601, "species_taxid": 55601, "relation_to_type": "type", "validated": true, "ani": 96.3484, "matched_fragments": 916, "total_fragments": 1032, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Vibrio anguillarum", "strain": "strain=NCTC12159", "accession": "GCA_900452855.1", "taxid": 55601, "species_taxid": 55601, "relation_to_type": "type", "validated": true, "ani": 96.3175, "matched_fragments": 943, "total_fragments": 1032, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Vibrio aestuarianus subsp. cardii", "strain": "strain=12/122 3T3", "accession": "GCA_011090275.1", "taxid": 2807650, "species_taxid": 28171, "relation_to_type": "type", "validated": true, "ani": 81.8572, "matched_fragments": 623, "total_fragments": 1032, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio aestuarianus", "strain": "strain=LMG 7909", "accession": "GCA_012395185.1", "taxid": 28171, "species_taxid": 28171, "relation_to_type": "type", "validated": true, "ani": 81.6514, "matched_fragments": 613, "total_fragments": 1032, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio aestuarianus subsp. francensis", "strain": "strain=02/041", "accession": "GCA_012395215.1", "taxid": 1443279, "species_taxid": 28171, "relation_to_type": "type", "validated": true, "ani": 81.6297, "matched_fragments": 624, "total_fragments": 1032, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio cidicii", "strain": "strain=2756-81", "accession": "GCA_009763805.1", "taxid": 1763883, "species_taxid": 1763883, "relation_to_type": "type", "validated": true, "ani": 79.1556, "matched_fragments": 326, "total_fragments": 1032, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio navarrensis", "strain": "strain=ATCC 51183", "accession": "GCA_000764325.1", "taxid": 29495, "species_taxid": 29495, "relation_to_type": "type", "validated": true, "ani": 79.1501, "matched_fragments": 304, "total_fragments": 1032, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio ichthyoenteri", "strain": "strain=ATCC 700023", "accession": "GCA_000222605.2", "taxid": 142461, "species_taxid": 142461, "relation_to_type": "type", "validated": true, "ani": 79.1298, "matched_fragments": 266, "total_fragments": 1032, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio furnissii", "strain": "strain=PartQ-Vfurnissii-RM8376", "accession": "GCA_022869905.1", "taxid": 29494, "species_taxid": 29494, "relation_to_type": "type", "validated": true, "ani": 79.0462, "matched_fragments": 388, "total_fragments": 1032, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio fortis", "strain": "strain=LMG 21557", "accession": "GCA_024347475.1", "taxid": 212667, "species_taxid": 212667, "relation_to_type": "type", "validated": true, "ani": 78.9466, "matched_fragments": 263, "total_fragments": 1032, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio natriegens", "strain": "strain=14048", "accession": "GCA_024508015.1", "taxid": 691, "species_taxid": 691, "relation_to_type": "type", "validated": true, "ani": 78.9407, "matched_fragments": 281, "total_fragments": 1032, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio ziniensis", "strain": "strain=ZWAL4003", "accession": "GCA_011064285.1", "taxid": 2711221, "species_taxid": 2711221, "relation_to_type": "type", "validated": true, "ani": 78.8625, "matched_fragments": 322, "total_fragments": 1032, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio cortegadensis", "strain": "strain=CECT 7227", "accession": "GCA_024347395.1", "taxid": 1328770, 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