{ "type": "genome", "identifier": "GCF_000257825.1", "organism": "Streptococcus pseudopneumoniae ATCC BAA-960 = CCUG 49455", "title": "Streptococcus pseudopneumoniae ATCC BAA-960 = CCUG 49455", "description": "na", "data type": "Genome sequencing and assembly", "organization": "J. Craig Venter Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000257825.1", "bioproject": "PRJNA224116", "biosample": "SAMN00761794", "wgs_master": "AICS00000000.1", "refseq_category": "na", "taxid": "889205", "species_taxid": "257758", "organism_name": "Streptococcus pseudopneumoniae ATCC BAA-960 = CCUG 49455", "infraspecific_name": "strain=ATCC BAA-960", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2012/04/05", "asm_name": "ASM25782v1", "asm_submitter": "J. Craig Venter Institute", "gbrs_paired_asm": "GCA_000257825.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/257/825/GCF_000257825.1_ASM25782v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2085749", "genome_size_ungapped": "2085749", "gc_percent": "40.000000", "replicon_count": "0", "scaffold_count": "253", "contig_count": "253", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000257825.1-RS_2024_07_29", "annotation_date": "2024-07-29", "total_gene_count": "2157", "protein_coding_gene_count": "1983", "non_coding_gene_count": "31", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2012-04-05", "dateModified": "2012-04-05", "datePublished": "2012-04-05", "_annotation": { "sample_count": 1, "sample_organism": [ "Streptococcus pseudopneumoniae ATCC BAA-960 = CCUG 49455" ], "sample_taxid": [ "889205" ], "sample_host_organism": [ "Homo sapiens" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "not determined" ], "sample_host_location_id": [], "data_size": "0.597 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2085749", "Number of Sequences": "253", "Longest Sequences (bp)": "58312", "N50 (bp)": "13015", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "39.9", "Number of CDSs": "2010", "Average Protein Length": "286.5", "Coding Ratio (%)": "82.8", "Number of rRNAs": "2", "Number of tRNAs": "25", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { 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"strain": "strain=NCTC7465", "accession": "GCA_001457635.1", "taxid": 1313, "species_taxid": 1313, "relation_to_type": "type", "validated": true, "ani": 94.3598, "matched_fragments": 476, "total_fragments": 575, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus toyakuensis", "strain": "strain=TP1632", "accession": "GCA_024346585.1", "taxid": 2819619, "species_taxid": 2819619, "relation_to_type": "type", "validated": true, "ani": 92.2683, "matched_fragments": 458, "total_fragments": 575, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus mitis", "strain": "strain=CCUG 31611", "accession": "GCA_002014755.1", "taxid": 28037, "species_taxid": 28037, "relation_to_type": "suspected-type", "validated": true, "ani": 92.1706, "matched_fragments": 417, "total_fragments": 575, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus shenyangsis", "strain": "strain=D19", "accession": "GCA_006385785.1", "taxid": 2589786, "species_taxid": 2589786, "relation_to_type": "type", "validated": true, "ani": 92.1157, "matched_fragments": 450, "total_fragments": 575, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus mitis", "strain": "strain=NCTC 12261", "accession": "GCA_000148585.3", "taxid": 28037, "species_taxid": 28037, "relation_to_type": "suspected-type", "validated": true, "ani": 92.0856, "matched_fragments": 421, "total_fragments": 575, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus mitis", "strain": "strain=NCTC12261", "accession": "GCA_900459425.1", "taxid": 28037, "species_taxid": 28037, "relation_to_type": "suspected-type", "validated": true, "ani": 92.0239, "matched_fragments": 432, "total_fragments": 575, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus gwangjuense", "strain": "strain=ChDC B345", "accession": "GCA_003627155.1", "taxid": 1433513, "species_taxid": 1433513, "relation_to_type": "type", "validated": true, "ani": 91.9561, "matched_fragments": 417, "total_fragments": 575, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus vulneris", "strain": "strain=DM3B3", "accession": "GCA_019218685.1", "taxid": 2853160, "species_taxid": 2853160, "relation_to_type": "type", "validated": true, "ani": 91.9359, "matched_fragments": 414, "total_fragments": 575, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus symci", "strain": "strain=C17", "accession": "GCA_006385165.1", "taxid": 2588991, "species_taxid": 2588991, "relation_to_type": "type", "validated": true, "ani": 91.4596, "matched_fragments": 419, "total_fragments": 575, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus downii", "strain": "strain=CECT 9732", "accession": "GCA_004353325.1", "taxid": 1968889, "species_taxid": 1968889, "relation_to_type": "type", "validated": true, "ani": 86.8767, "matched_fragments": 387, "total_fragments": 575, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus parasuis", "strain": "strain=SUT-286", "accession": "GCA_021654455.1", "taxid": 1501662, "species_taxid": 1501662, "relation_to_type": "suspected-type", "validated": true, "ani": 79.8418, "matched_fragments": 117, "total_fragments": 575, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus oriscaviae", "strain": "strain=HKU75", "accession": "GCA_018137985.1", "taxid": 2781599, "species_taxid": 2781599, "relation_to_type": "type", "validated": true, "ani": 78.0834, "matched_fragments": 89, "total_fragments": 575, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_002087075.1", "gtdb_species": "s__Streptococcus pseudopneumoniae", "ani": 99.9859, "matched_fragments": 573, 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"vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Streptococcus", "pseudopneumoniae", "ATCC", "BAA-960", "=", "CCUG", "49455" ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }