{ "type": "genome", "identifier": "GCF_000260115.1", "organism": "Galbibacter orientalis DSM 19592", "title": "Galbibacter orientalis DSM 19592", "description": "na", "data type": "Genome sequencing and assembly", "organization": "JGI", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000260115.1", "bioproject": "PRJNA224116", "biosample": "SAMN02261416", "wgs_master": "AJUG00000000.1", "refseq_category": "reference genome", "taxid": "926559", "species_taxid": "453852", "organism_name": "Galbibacter orientalis DSM 19592", "infraspecific_name": "strain=DSM 19592", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2012/05/04", "asm_name": "ASM26011v1", "asm_submitter": "JGI", "gbrs_paired_asm": "GCA_000260115.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/260/115/GCF_000260115.1_ASM26011v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4508243", "genome_size_ungapped": "4508143", "gc_percent": "33.500000", "replicon_count": "0", "scaffold_count": "2", "contig_count": "3", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000260115.1-RS_2024_10_23", "annotation_date": "2024-10-23", "total_gene_count": "3948", "protein_coding_gene_count": "3851", "non_coding_gene_count": "58", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2012-05-04", "dateModified": "2012-05-04", "datePublished": "2012-05-04", "_annotation": { "sample_count": 1, "sample_organism": [ "Galbibacter orientalis DSM 19592" ], "sample_taxid": [ "926559" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Korea" ], "sample_host_location_id": [], "data_size": "1.252 MB", "sample_ph_range": { "min": 5376.0, "max": 5376.0 }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4508243", "Number of Sequences": "2", "Longest Sequences (bp)": "3950031", "N50 (bp)": "3950031", "Gap Ratio (%)": "0.002218", "GCcontent (%)": "33.6", "Number of CDSs": "3875", "Average Protein Length": "332.5", "Coding Ratio (%)": "85.7", "Number of rRNAs": "9", "Number of tRNAs": "47", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Joostella marina", "strain": "strain=DSM 19592", "accession": "GCA_000260115.1", "taxid": 453852, "species_taxid": 453852, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1502, "total_fragments": 1502, "ani_threshold": 95, 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"GCA_004310325.1", "taxid": 2527939, "species_taxid": 2527939, "relation_to_type": "type", "validated": true, "ani": 76.8736, "matched_fragments": 103, "total_fragments": 1502, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Psychroserpens jangbogonensis", "strain": "strain=PAMC 27130", "accession": "GCA_000797465.1", "taxid": 1484460, "species_taxid": 1484460, "relation_to_type": "type", "validated": true, "ani": 76.8335, "matched_fragments": 106, "total_fragments": 1502, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulophaga baltica", "strain": "strain=DSM 24729", "accession": "GCA_900102165.1", "taxid": 76594, "species_taxid": 76594, "relation_to_type": "type", "validated": true, "ani": 76.7722, "matched_fragments": 168, "total_fragments": 1502, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hyunsoonleella ulvae", "strain": "strain=HU1-3", "accession": "GCA_016827605.1", "taxid": 2799948, "species_taxid": 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