{
    "type": "genome",
    "identifier": "GCF_000260775.1",
    "organism": "Secundilactobacillus malefermentans DSM 5705 = KCTC 3548",
    "title": "Secundilactobacillus malefermentans DSM 5705 = KCTC 3548",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Korea Research Institute of Bioscience and Biotechnology",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_000260775.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMD00036558",
        "wgs_master": "BACN00000000.1",
        "refseq_category": "na",
        "taxid": "1122149",
        "species_taxid": "176292",
        "organism_name": "Secundilactobacillus malefermentans DSM 5705 = KCTC 3548",
        "infraspecific_name": "strain=KCTC 3548",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2011/06/27",
        "asm_name": "ASM26077v1",
        "asm_submitter": "Korea Research Institute of Bioscience and Biotechnology",
        "gbrs_paired_asm": "GCA_000260775.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/260/775/GCF_000260775.1_ASM26077v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "2003922",
        "genome_size_ungapped": "2003922",
        "gc_percent": "41.000000",
        "replicon_count": "0",
        "scaffold_count": "172",
        "contig_count": "172",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_000260775.1-RS_2024_08_08",
        "annotation_date": "2024-08-08",
        "total_gene_count": "2058",
        "protein_coding_gene_count": "1941",
        "non_coding_gene_count": "69",
        "pubmed_id": "21914865"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2011-06-27",
    "dateModified": "2011-06-27",
    "datePublished": "2011-06-27",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Secundilactobacillus malefermentans DSM 5705 = KCTC 3548"
        ],
        "sample_taxid": [
            "1122149"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [],
        "sample_host_location_id": [],
        "data_size": "0.574 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "2002505",
        "Number of Sequences": "162",
        "Longest Sequences (bp)": "109332",
        "N50 (bp)": "33759",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "41.1",
        "Number of CDSs": "1929",
        "Average Protein Length": "297.1",
        "Coding Ratio (%)": "85.9",
        "Number of rRNAs": "2",
        "Number of tRNAs": "63",
        "Number of CRISPRs": "3"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Secundilactobacillus malefermentans",
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                "species_taxid": 176292,
                "relation_to_type": "type",
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                "status": "conclusive"
            },
            {
                "organism_name": "Secundilactobacillus malefermentans",
                "strain": "strain=ATCC 49373",
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                "relation_to_type": "type",
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                "ani": 99.9957,
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                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Secundilactobacillus malefermentans",
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                "accession": "GCA_001436395.1",
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                "species_taxid": 176292,
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            },
            {
                "organism_name": "Secundilactobacillus oryzae",
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                "accession": "GCA_000740055.1",
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                "species_taxid": 1202668,
                "relation_to_type": "type",
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                "matched_fragments": 195,
                "total_fragments": 598,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Secundilactobacillus oryzae",
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                "accession": "GCA_001311525.1",
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                "species_taxid": 1202668,
                "relation_to_type": "type",
                "validated": true,
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                "total_fragments": 598,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Secundilactobacillus odoratitofui",
                "strain": "strain=JCM 15043",
                "accession": "GCA_001313185.1",
                "taxid": 480930,
                "species_taxid": 480930,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.598,
                "matched_fragments": 72,
                "total_fragments": 598,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_001436395.1",
                "gtdb_species": "s__Secundilactobacillus malefermentans",
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                "matched_fragments": 587,
                "total_fragments": 598,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Secundilactobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.75",
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            },
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Secundilactobacillus",
                "ani_circumscription_radius": 95.0,
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                "num_clustered_genomes": 2,
                "status": "-"
            },
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                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "num_clustered_genomes": 1,
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            },
            {
                "accession": "GCF_003946265.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Levilactobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
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            },
            {
                "accession": "GCF_002583405.1",
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                "accession": "GCF_002217925.1",
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                "mean_intra_species_ani": "N/A",
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            },
            {
                "accession": "GCF_001435975.1",
                "gtdb_species": "s__Secundilactobacillus collinoides",
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Secundilactobacillus",
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                "num_clustered_genomes": 3,
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            },
            {
                "accession": "GCF_016861565.1",
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                "mean_intra_species_ani": "N/A",
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                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
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        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
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        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_genome_taxon": [
        "Secundilactobacillus",
        "malefermentans",
        "DSM",
        "5705",
        "=",
        "KCTC",
        "3548"
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}