{ "type": "genome", "identifier": "GCF_000261325.1", "organism": "Rickettsia conorii subsp. caspia A-167", "title": "Rickettsia conorii subsp. caspia A-167", "description": "na", "data type": "Genome sequencing and assembly", "organization": "URMITE CNRS UMR 6236 IRD 198", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000261325.1", "bioproject": "PRJNA224116", "biosample": "SAMN02471338", "wgs_master": "AJUR00000000.1", "refseq_category": "na", "taxid": "140892", "species_taxid": "781", "organism_name": "Rickettsia conorii subsp. caspia A-167", "infraspecific_name": "strain=A-167", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2012/05/04", "asm_name": "RcoCa1.0", "asm_submitter": "URMITE CNRS UMR 6236 IRD 198", "gbrs_paired_asm": "GCA_000261325.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/261/325/GCF_000261325.1_RcoCa1.0", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "1260331", "genome_size_ungapped": "1260331", "gc_percent": "32.500000", "replicon_count": "0", "scaffold_count": "25", "contig_count": "25", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000261325.1-RS_2025_01_08", "annotation_date": "2025-01-08", "total_gene_count": "1476", "protein_coding_gene_count": "1240", "non_coding_gene_count": "40", "pubmed_id": "22887666" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2012-05-04", "dateModified": "2012-05-04", "datePublished": "2012-05-04", "_annotation": { "sample_count": 1, "sample_organism": [ "Rickettsia conorii subsp. caspia A-167" ], "sample_taxid": [ "140892" ], "sample_host_organism": [ "Rhipicephalus pumilio" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Russia: Astrakhan" ], "sample_host_location_id": [], "data_size": "0.353 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 95.83, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "1260331", "Number of Sequences": "25", "Longest Sequences (bp)": "163457", "N50 (bp)": "62085", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "32.5", "Number of CDSs": "1401", "Average Protein Length": "231.4", "Coding Ratio (%)": "77.2", "Number of rRNAs": "3", "Number of tRNAs": "33", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Rickettsia conorii subsp. caspia", "strain": "strain=A-167", "accession": "GCA_000261325.1", "taxid": 302011, "species_taxid": 781, "relation_to_type": "suspected-type", "validated": true, 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