{
    "type": "genome",
    "identifier": "GCF_000261485.1",
    "organism": "Sinorhizobium sojae CCBAU 05684",
    "title": "Sinorhizobium sojae CCBAU 05684",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "China Agricultural University",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_000261485.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN02469481",
        "wgs_master": "AJQT00000000.1",
        "refseq_category": "na",
        "taxid": "716928",
        "species_taxid": "716925",
        "organism_name": "Sinorhizobium sojae CCBAU 05684",
        "infraspecific_name": "strain=CCBAU 05684",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2012/05/03",
        "asm_name": "05684",
        "asm_submitter": "China Agricultural University",
        "gbrs_paired_asm": "GCA_000261485.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/261/485/GCF_000261485.1_05684",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "5964336",
        "genome_size_ungapped": "5964336",
        "gc_percent": "62.000000",
        "replicon_count": "0",
        "scaffold_count": "231",
        "contig_count": "231",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_000261485.1-RS_2024_09_13",
        "annotation_date": "2024-09-13",
        "total_gene_count": "5744",
        "protein_coding_gene_count": "5415",
        "non_coding_gene_count": "54",
        "pubmed_id": "22586130"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2012-05-03",
    "dateModified": "2012-05-03",
    "datePublished": "2012-05-03",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Sinorhizobium sojae CCBAU 05684"
        ],
        "sample_taxid": [
            "716928"
        ],
        "sample_host_organism": [
            "Glycine max"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "China"
        ],
        "sample_host_location_id": [],
        "data_size": "1.679 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "5964336",
        "Number of Sequences": "231",
        "Longest Sequences (bp)": "265854",
        "N50 (bp)": "61030",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "62.0",
        "Number of CDSs": "5536",
        "Average Protein Length": "299.0",
        "Coding Ratio (%)": "83.3",
        "Number of rRNAs": "3",
        "Number of tRNAs": "51",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Ensifer sojae",
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                "relation_to_type": "type",
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                "matched_fragments": 1867,
                "total_fragments": 1876,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Ensifer sojae",
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                "status": "conclusive"
            },
            {
                "organism_name": "Ensifer alkalisoli",
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            {
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
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                "taxid": 76747,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sinorhizobium fredii",
                "strain": "strain=USDA 205",
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                "species_taxid": 380,
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                "matched_fragments": 1229,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Shinella pollutisoli",
                "strain": "strain=KCTC 52677",
                "accession": "GCA_024609765.1",
                "taxid": 2250594,
                "species_taxid": 2250594,
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                "total_fragments": 1876,
                "ani_threshold": 95,
                "status": "below_threshold"
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            {
                "organism_name": "Shinella yambaruensis",
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                "accession": "GCA_022899355.1",
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                "species_taxid": 415996,
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            },
            {
                "organism_name": "Shinella sumterensis",
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                "accession": "GCA_004514425.2",
                "taxid": 1967501,
                "species_taxid": 1967501,
                "relation_to_type": "type",
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                "ani": 79.8548,
                "matched_fragments": 667,
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                "status": "below_threshold"
            },
            {
                "organism_name": "Shinella oryzae",
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                "accession": "GCA_023038235.1",
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                "species_taxid": 2871820,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Ciceribacter ferrooxidans",
                "strain": "strain=F8825",
                "accession": "GCA_004137355.1",
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                "relation_to_type": "type",
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                "status": "below_threshold"
            }
        ],
        "cc_result": {
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                "accession": "GCF_002288525.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Sinorhizobium",
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    "_bac2feature": {
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    "_genome_taxon": [
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        "sojae",
        "CCBAU",
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    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}