{
    "type": "genome",
    "identifier": "GCF_000262225.1",
    "organism": "Fusobacterium necrophorum subsp. funduliforme ATCC 51357",
    "title": "Fusobacterium necrophorum subsp. funduliforme ATCC 51357",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "J. Craig Venter Institute",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_000262225.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN00761801",
        "wgs_master": "AJSY00000000.1",
        "refseq_category": "na",
        "taxid": "1095747",
        "species_taxid": "859",
        "organism_name": "Fusobacterium necrophorum subsp. funduliforme ATCC 51357",
        "infraspecific_name": "strain=ATCC 51357",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2012/05/10",
        "asm_name": "ASM26222v1",
        "asm_submitter": "J. Craig Venter Institute",
        "gbrs_paired_asm": "GCA_000262225.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/262/225/GCF_000262225.1_ASM26222v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "2110802",
        "genome_size_ungapped": "2110802",
        "gc_percent": "35.000000",
        "replicon_count": "0",
        "scaffold_count": "45",
        "contig_count": "45",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_000262225.1-RS_2024_07_29",
        "annotation_date": "2024-07-29",
        "total_gene_count": "2064",
        "protein_coding_gene_count": "2001",
        "non_coding_gene_count": "41",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2012-05-10",
    "dateModified": "2012-05-10",
    "datePublished": "2012-05-10",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Fusobacterium necrophorum subsp. funduliforme ATCC 51357"
        ],
        "sample_taxid": [
            "1095747"
        ],
        "sample_host_organism": [
            "Homo sapiens"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "not determined"
        ],
        "sample_host_location_id": [],
        "data_size": "0.587 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "2110802",
        "Number of Sequences": "45",
        "Longest Sequences (bp)": "183913",
        "N50 (bp)": "85366",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "34.9",
        "Number of CDSs": "2019",
        "Average Protein Length": "318.3",
        "Coding Ratio (%)": "91.3",
        "Number of rRNAs": "3",
        "Number of tRNAs": "35",
        "Number of CRISPRs": "2"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Fusobacterium necrophorum subsp. funduliforme",
                "strain": "strain=ATCC 51357",
                "accession": "GCA_000262225.1",
                "taxid": 143387,
                "species_taxid": 859,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 677,
                "total_fragments": 680,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Fusobacterium necrophorum subsp. funduliforme",
                "strain": "strain=CCUG 42162",
                "accession": "GCA_008801775.1",
                "taxid": 143387,
                "species_taxid": 859,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9998,
                "matched_fragments": 679,
                "total_fragments": 680,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Fusobacterium necrophorum",
                "strain": "strain=ATCC 25286",
                "accession": "GCA_900104395.1",
                "taxid": 859,
                "species_taxid": 859,
                "relation_to_type": "type",
                "validated": true,
                "ani": 97.1455,
                "matched_fragments": 581,
                "total_fragments": 680,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Fusobacterium necrophorum subsp. necrophorum",
                "strain": "strain=ATCC 25286",
                "accession": "GCA_004006635.1",
                "taxid": 143388,
                "species_taxid": 859,
                "relation_to_type": "type",
                "validated": true,
                "ani": 97.1408,
                "matched_fragments": 591,
                "total_fragments": 680,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Fusobacterium gonidiaformans",
                "strain": "strain=ATCC 25563",
                "accession": "GCA_003019695.1",
                "taxid": 849,
                "species_taxid": 849,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.4502,
                "matched_fragments": 405,
                "total_fragments": 680,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_004006635.1",
                "gtdb_species": "s__Fusobacterium_C necrophorum",
                "ani": 97.1592,
                "matched_fragments": 590,
                "total_fragments": 680,
                "gtdb_taxonomy": "d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium_C",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.54",
                "min_intra_species_ani": "95.37",
                "mean_intra_species_af": "0.87",
                "min_intra_species_af": "0.77",
                "num_clustered_genomes": 49,
                "status": "conclusive"
            },
            {
                "accession": "GCF_003019695.1",
                "gtdb_species": "s__Fusobacterium_C gonidiaformans",
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                "gtdb_taxonomy": "d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium_C",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.88",
                "min_intra_species_ani": "98.56",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 6,
                "status": "-"
            },
            {
                "accession": "GCF_001457555.1",
                "gtdb_species": "s__Fusobacterium polymorphum",
                "ani": 77.4819,
                "matched_fragments": 75,
                "total_fragments": 680,
                "gtdb_taxonomy": "d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.55",
                "min_intra_species_ani": "95.37",
                "mean_intra_species_af": "0.85",
                "min_intra_species_af": "0.79",
                "num_clustered_genomes": 30,
                "status": "-"
            },
            {
                "accession": "GCF_900095705.1",
                "gtdb_species": "s__Fusobacterium massiliense",
                "ani": 76.9531,
                "matched_fragments": 79,
                "total_fragments": 680,
                "gtdb_taxonomy": "d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_000493815.1",
                "gtdb_species": "s__Fusobacterium nucleatum_E",
                "ani": 76.6839,
                "matched_fragments": 81,
                "total_fragments": 680,
                "gtdb_taxonomy": "d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.05",
                "min_intra_species_ani": "99.05",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.94",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_000158275.2",
                "gtdb_species": "s__Fusobacterium animalis",
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                "matched_fragments": 88,
                "total_fragments": 680,
                "gtdb_taxonomy": "d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.57",
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                "mean_intra_species_af": "0.88",
                "min_intra_species_af": "0.80",
                "num_clustered_genomes": 29,
                "status": "-"
            },
            {
                "accession": "GCF_016724785.1",
                "gtdb_species": "s__Fusobacterium canifelinum",
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                "total_fragments": 680,
                "gtdb_taxonomy": "d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.22",
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                "mean_intra_species_af": "0.90",
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                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_008633215.1",
                "gtdb_species": "s__Fusobacterium nucleatum_J",
                "ani": 76.396,
                "matched_fragments": 93,
                "total_fragments": 680,
                "gtdb_taxonomy": "d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium",
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                "mean_intra_species_ani": "98.47",
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                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_000381725.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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            },
            {
                "accession": "GCF_012843705.1",
                "gtdb_species": "s__Fusobacterium_B sp012843705",
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                "gtdb_taxonomy": "d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium_B",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000622245.1",
                "gtdb_species": "s__Fusobacterium_B perfoetens",
                "ani": 75.5682,
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                "total_fragments": 680,
                "gtdb_taxonomy": "d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium_B",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.302,
        "cell_length": 0.115,
        "doubling_h": -0.328,
        "growth_tmp": 37.0,
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        "optimum_ph": 7.0,
        "genome_size": 2274801.575,
        "gc_content": 34.276,
        "coding_genes": 2081.0,
        "rRNA16S_genes": 5.708,
        "tRNA_genes": 50.0,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 0.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
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        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Fusobacterium",
        "necrophorum",
        "subsp.",
        "funduliforme",
        "ATCC",
        "51357"
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}