{
    "type": "genome",
    "identifier": "GCF_000262265.1",
    "organism": "Haemophilus parahaemolyticus HK385",
    "title": "Haemophilus parahaemolyticus HK385",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "J. Craig Venter Institute",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_000262265.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN00761805",
        "wgs_master": "AJSW00000000.1",
        "refseq_category": "na",
        "taxid": "1095744",
        "species_taxid": "735",
        "organism_name": "Haemophilus parahaemolyticus HK385",
        "infraspecific_name": "strain=HK385",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2012/05/10",
        "asm_name": "ASM26226v1",
        "asm_submitter": "J. Craig Venter Institute",
        "gbrs_paired_asm": "GCA_000262265.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/262/265/GCF_000262265.1_ASM26226v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "2030584",
        "genome_size_ungapped": "2030584",
        "gc_percent": "40.000000",
        "replicon_count": "0",
        "scaffold_count": "61",
        "contig_count": "61",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)",
        "annotation_date": "2024-02-18",
        "total_gene_count": "2006",
        "protein_coding_gene_count": "1908",
        "non_coding_gene_count": "43",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2012-05-10",
    "dateModified": "2012-05-10",
    "datePublished": "2012-05-10",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Haemophilus parahaemolyticus HK385"
        ],
        "sample_taxid": [
            "1095744"
        ],
        "sample_host_organism": [
            "Homo sapiens"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "not determined"
        ],
        "sample_host_location_id": [],
        "data_size": "0.576 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "2030584",
        "Number of Sequences": "61",
        "Longest Sequences (bp)": "197572",
        "N50 (bp)": "73068",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "40.1",
        "Number of CDSs": "1925",
        "Average Protein Length": "307.2",
        "Coding Ratio (%)": "87.4",
        "Number of rRNAs": "3",
        "Number of tRNAs": "36",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Haemophilus parahaemolyticus",
                "strain": "strain=HK385",
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                "species_taxid": 735,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 642,
                "total_fragments": 645,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Haemophilus parahaemolyticus",
                "strain": "strain=NCTC 8479",
                "accession": "GCA_900450675.1",
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                "species_taxid": 735,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9987,
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                "total_fragments": 645,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Haemophilus parahaemolyticus",
                "strain": "strain=CCUG 3716",
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                "relation_to_type": "type",
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                "ani": 99.9982,
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                "ani_threshold": 95,
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            },
            {
                "organism_name": "Haemophilus parahaemolyticus",
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                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9948,
                "matched_fragments": 645,
                "total_fragments": 645,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Haemophilus paraphrohaemolyticus",
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                "taxid": 736,
                "species_taxid": 736,
                "relation_to_type": "type",
                "validated": true,
                "ani": 91.0131,
                "matched_fragments": 500,
                "total_fragments": 645,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
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            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
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                "accession": "GCF_002015035.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus_A",
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            {
                "accession": "GCA_018373095.1",
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                "mean_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_002015045.1",
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                "status": "-"
            },
            {
                "accession": "GCF_000238795.1",
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                "num_clustered_genomes": 6,
                "status": "-"
            },
            {
                "accession": "GCF_003101015.1",
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            },
            {
                "accession": "GCF_000188255.1",
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                "accession": "GCF_901687125.1",
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        ]
    },
    "_bac2feature": {
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        "cell_diameter": -0.481,
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        "growth_tmp": 37.0,
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        "bacillus_cell_shape": 1.0,
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    "_genome_taxon": [
        "Haemophilus",
        "parahaemolyticus",
        "HK385"
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    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}