{ "type": "genome", "identifier": "GCF_000262445.1", "organism": "Thermoanaerobacter siderophilus SR4", "title": "Thermoanaerobacter siderophilus SR4", "description": "na", "data type": "Genome sequencing and assembly", "organization": "JGI", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000262445.1", "bioproject": "PRJNA224116", "biosample": "SAMN02261414", "wgs_master": "AJUD00000000.1", "refseq_category": "reference genome", "taxid": "880478", "species_taxid": "106578", "organism_name": "Thermoanaerobacter siderophilus SR4", "infraspecific_name": "strain=SR4", "isolate": "na", "version_status": "latest", "assembly_level": "Chromosome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2012/06/19", "asm_name": "ASM26244v1", "asm_submitter": "JGI", "gbrs_paired_asm": "GCA_000262445.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/262/445/GCF_000262445.1_ASM26244v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2540159", "genome_size_ungapped": "2538059", "gc_percent": "34.000000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "22", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000262445.1-RS_2024_04_22", "annotation_date": "2024-04-22", "total_gene_count": "2625", "protein_coding_gene_count": "2253", "non_coding_gene_count": "69", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2012-06-19", "dateModified": "2012-06-19", "datePublished": "2012-06-19", "_annotation": { "sample_count": 1, "sample_organism": [ "Thermoanaerobacter siderophilus SR4" ], "sample_taxid": [ "880478" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [ "None" ], "sample_host_disease_id": [], "sample_host_location": [ "Russia" ], "sample_host_location_id": [], "data_size": "0.702 MB", "sample_ph_range": { "min": 6568.0, "max": 6568.0 }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2540159", "Number of Sequences": "1", "Longest Sequences (bp)": "2540159", "N50 (bp)": "2540159", "Gap Ratio (%)": "0.082672", "GCcontent (%)": "34.2", "Number of CDSs": "2758", "Average Protein Length": "270.9", "Coding Ratio (%)": "88.2", "Number of rRNAs": "7", "Number of tRNAs": "57", "Number of CRISPRs": "4" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Thermoanaerobacter siderophilus", "strain": "strain=SR4", "accession": "GCA_000262445.1", "taxid": 106578, "species_taxid": 106578, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 846, "total_fragments": 846, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Thermoanaerobacter wiegelii", "strain": "strain=Rt8.B1", "accession": "GCA_000147695.3", "taxid": 46354, "species_taxid": 46354, "relation_to_type": "type", "validated": true, "ani": 97.2229, "matched_fragments": 741, "total_fragments": 846, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Thermoanaerobacter uzonensis", "strain": "strain=DSM 18761", "accession": "GCA_900129115.1", "taxid": 447593, "species_taxid": 447593, "relation_to_type": "type", "validated": true, "ani": 94.4048, "matched_fragments": 652, "total_fragments": 846, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thermoanaerobacter thermocopriae", "strain": "strain=JCM 7501", "accession": "GCA_001310975.1", "taxid": 29350, "species_taxid": 29350, "relation_to_type": "suspected-type", "validated": true, "ani": 90.8671, "matched_fragments": 596, "total_fragments": 846, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thermoanaerobacter thermocopriae", "strain": "strain=ATCC 51646", "accession": "GCA_000518565.1", "taxid": 29350, "species_taxid": 29350, "relation_to_type": "suspected-type", "validated": true, "ani": 90.8575, "matched_fragments": 605, "total_fragments": 846, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thermoanaerobacter kivui", "strain": "strain=DSM 2030; 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